| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,660,137 – 12,660,267 |
| Length | 130 |
| Max. P | 0.868069 |
| Location | 12,660,137 – 12,660,249 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.12 |
| Mean single sequence MFE | -44.83 |
| Consensus MFE | -39.90 |
| Energy contribution | -39.90 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.89 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12660137 112 + 20766785 GAGCGUUUGACAU-AAUCUAC-AACAUGGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCAAGU-----U-U .............-.......-(((.(((((((((((.(((((.((((.((((....)))).)))).((((((((....))))).))))))))....))).)))))))).))-----)-. ( -41.20) >DroVir_CAF1 30167 111 + 1 --AUAUUGGGCGACGCCACGA-AGCAUGGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCAAGUG-C----- --...((((((...))).)))-.((.(((((((((((.(((((.((((.((((....)))).)))).((((((((....))))).))))))))....))).)))))))).)).-.----- ( -45.00) >DroPse_CAF1 21317 117 + 1 AGCCAUUUGGCGGCUAUUUAG-GAAAUGGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCAAGUG-AAUU-G ...(((((((((((.......-....((((.((.(.(((.((((........)))))))...).))))))(((((....)))))(((((.......))))).)))))))))))-....-. ( -49.60) >DroGri_CAF1 21926 113 + 1 GUGCAUUUGACAACGGCCACU-CAAAUGGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCAAGUG-A----- ...((((((....(((((((.-(........).)))))))((((((((.(((.((((((.......))))).).)))...))))(((((.......)))))))))..))))))-.----- ( -46.20) >DroWil_CAF1 21892 117 + 1 -GUCAUUUGUCUC-AGUCGACAGACAUGGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCAAGUGGAAAU-A -(((...((((..-....))))))).(((((((((((.(((((.((((.((((....)))).)))).((((((((....))))).))))))))....))).)))))))).........-. ( -45.20) >DroMoj_CAF1 57151 116 + 1 --AUAUUGGACGGCAGAAGAG-AACAUGGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCAAGUG-ACAAGA --...((((.((((.((.(((-(...((((.((.(.(((.((((........)))))))...).)))))).)))).))....(.(((((.......))))))))))))))...-...... ( -41.80) >consensus __ACAUUUGACGACAGUCGAC_AACAUGGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGUUUAAGGCACCAGUCUCCUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCAAGUG_A__U__ ..........................(((((((((((.(((((.((((.((((....)))).)))).((((((((....))))).))))))))....))).))))))))........... (-39.90 = -39.90 + -0.00)
| Location | 12,660,175 – 12,660,267 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.11 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -26.20 |
| Energy contribution | -26.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12660175 92 - 20766785 UAAA----UU-GUA--------------AACAAAAAAAA----ACUUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCU ....----..-...--------------...........----.......(((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).)))) ( -26.20) >DroVir_CAF1 30204 98 - 1 AGG-----UUUUUAACAAGA--------AUAAAAAAA----GCACUUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCU .((-----(((.........--------.........----......((..(((.((((.......)))))))..))((((.(.(((((.......)))))).)))))))))... ( -28.60) >DroSec_CAF1 18451 95 - 1 UACA----AU-ACU---AAG--------AAAAAAUAAAA----AAUUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCU ....----..-...---...--------...........----.......(((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).)))) ( -26.20) >DroSim_CAF1 20116 85 - 1 ------------------AG--------AAGAAAAAAAA----ACUUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCU ------------------..--------...........----.......(((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).)))) ( -26.20) >DroEre_CAF1 17491 98 - 1 UAUGGCAAAU-AA----GGG--------AUAAAAAAAAA----ACUUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCU ...(((...(-((----((.--------...........----.(((((..(((.((((.......)))))))..)))))..(.(((((.......)))))).)))))....))) ( -31.00) >DroAna_CAF1 17290 107 - 1 UUCA----AU-AAA---GUAACAAAAUAAACAAAAUAGAAUCCACUUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCU ....----..-...---.................................(((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).)))) ( -26.20) >consensus UACA____AU_AAA____AG________AAAAAAAAAAA____ACUUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCU ..................................................(((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).)))) (-26.20 = -26.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:14 2006