Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,658,400 – 12,658,622 |
Length | 222 |
Max. P | 0.868494 |
Location | 12,658,400 – 12,658,507 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.24 |
Mean single sequence MFE | -44.10 |
Consensus MFE | -30.37 |
Energy contribution | -28.68 |
Covariance contribution | -1.69 |
Combinations/Pair | 1.53 |
Mean z-score | -1.58 |
Structure conservation index | 0.69 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12658400 107 - 20766785 GUUGAAUCGUUCUAUUCGGCAGCGUGAGGAUUUGCCCAGUGUUCUUUGUGGUG-----CCU--------CGCAUCGUUCGGGACGCAGGGCUUCGAUGAUCGCUCGGUAGAAACGGAUAG ......(((((((((..(((..(....)((((.((((.(((((((..((((((-----(..--------.)))))))..))))))).))))......)))))))..)))).))))).... ( -37.30) >DroPse_CAF1 19448 118 - 1 GUUAAAUCGUCCUAUUCGGCAGCGUGAGGUUUUGCCCAGCGCCCUUUCUGGUGCGGCACUUC-GGUGUCCGUGUCGUUCGGGGCGCAGAGCUUCGAUGAUCGCUCGGUA-AAACGGAUAG ...........((((((.....(....)((((((((..(((((((...(((..((((((...-.))).)))..)))...))))))).((((..........))))))))-)))))))))) ( -52.30) >DroGri_CAF1 19778 114 - 1 GGUGAAUCGUUUUAUUCGGCAGCGUGAGGUUUUGCGUGAUGCCCUUUGCGGUAUGA--CUUCGGUUAUCCGUGUUG---UGGGCGUGGCGCUUCGAUGAUCGCUCGGUA-ACACGAAUAG ......((((.((((..(((..(....).....((((.((((((..(((((.((((--(....))))))))))...---.)))))).))))..........)))..)))-).)))).... ( -44.20) >DroYak_CAF1 18328 107 - 1 GUUGAAUCGUUCUAUUCGGCAGCGUGAGGAUUUGUCCAGUGUCCUUUGUGGUG-----CUU--------CGCACUGUUCGGAACGCAGGGCUUCGAUGAUCGCUCGGUAACCACGGAUAG ...........(((((((...((.((((((((.((((.((((((...(..(((-----(..--------.))))..)..)).)))).))))......)))).)))))).....))))))) ( -30.90) >DroAna_CAF1 15447 118 - 1 GGUGAAUCGUUCUAUUCGGCAGCGUGAGGAUUUGUCCAGCGGCCUUUGUGGUGUGGCGCUUC-GGUGUCCGCAUCCUCCGGGUCGUCGGGCUUCGAUGAUCGCUCGGUA-ACACGAAUAG ...........(((((((...((.((((((((.((((.(((((((..(.((((((((((...-.))).))))))))...))))))).))))......)))).)))))).-...))))))) ( -47.60) >DroPer_CAF1 19376 118 - 1 GUUAAAUCGUCCUAUUCGGCAGCGUGAGGUUUUGCCCAGCGCCCUUUCUGGUGCGGCACUUC-GGUGUCCGUGUCGUUCGGGGCGCAGAGCUUCGAUGAUCGCUCGGUA-AAACGGAUAG ...........((((((.....(....)((((((((..(((((((...(((..((((((...-.))).)))..)))...))))))).((((..........))))))))-)))))))))) ( -52.30) >consensus GUUGAAUCGUUCUAUUCGGCAGCGUGAGGAUUUGCCCAGCGCCCUUUGUGGUG_GG__CUUC_GGUGUCCGCAUCGUUCGGGGCGCAGGGCUUCGAUGAUCGCUCGGUA_AAACGGAUAG ...........(((((((...((.((((.....((((.(((((((...((((((((............))))))))...))))))).))))..((.....)))))))).....))))))) (-30.37 = -28.68 + -1.69)
Location | 12,658,507 – 12,658,622 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.14 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -24.35 |
Energy contribution | -24.72 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.07 |
Mean z-score | -2.04 |
Structure conservation index | 0.75 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868494 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12658507 115 + 20766785 UCAUCAACGCGGGUGCACUUGGCUUUCAGCUAGUGUGAAAGUAUGUGAAGACUGACUACAGAAAUGAUCCUGUGAAGUAUAGUCUUAAGUU-----UUUGCUGCCCAACCUGUGGAUCUU .......((((((((((((.(((.....))))))))....(((.(..(((((((((((((....))...((....))..)))))...))))-----))..))))...)))))))...... ( -32.50) >DroVir_CAF1 28349 115 + 1 UCAUCAACGCGGGUGUGACUUGCUUUCAGAAAGUGUGAAAGUAAGUGAAGACUGACUACAGAAAUGAUCCUGUGAAGUAUAGUCUUAACUU-----UUCAAUGCCCACCAAAAUGCUCUA ..........((((((.(((((((((((.......))))))))))).((((((((((((((........))))..))).))))))).....-----....)))))).............. ( -31.70) >DroGri_CAF1 19892 115 + 1 UCAUCAACGCGGGUGUGAAGUGCUUUCAGAUAGUGUGAAAGUAAGUGAAGACUGACUACAGAAAUGAUCCUGUGAAGUAUAGUCUUAAUUU-----UACAACGCCCAUCAAUGGGCUCUA ...(((.(((..((.(((((...))))).)).))))))..(((((..((((((((((((((........))))..))).)))))))...))-----)))...(((((....))))).... ( -32.10) >DroWil_CAF1 18151 115 + 1 UCAUCAACGCGGGUGUAUGUGGCUUUCUUUCAAUGUGAAAGUAAGUGAAGACUGACUACAGAAAUGAUCCUGUGAAGUAUAGUCUUAAAUU-----UUCAACGCCCGUCAAUGGCCCCUU ((((....((((((((.....((((.(((((.....))))).)))).((((((((((((((........))))..))).))))))).....-----....))))))))..))))...... ( -32.90) >DroMoj_CAF1 55233 115 + 1 UCAUCAGCGUGGGUAUGGUGUGCUUUCAUUUUGUGUGAAAGUAAGUGAAGACUGACUACAGAAAUGAUCCUGUGAAGUAUAGUCUUAAAUU-----UUCAACGCUCACCGAAGCGCUCUA .....(((((.(((..(((((((((((((.....)))))))).....((((((((((((((........))))..))).))))))).....-----....))))).)))...)))))... ( -33.40) >DroAna_CAF1 15565 115 + 1 UCAUCAACGCGGGUGUGCUUAGCUUUCAUCUAAUGUGAAAGUAUGUGAAGACUGACUACAGAAAUGAUCCUGUGAAGUAUAGUCUUAAAGAUACAAUCCAUCGCCCGA-----CGAUGUU .((((....((((((((....((((((((.....)))))))).((((((((((((((((((........))))..))).))))))).....))))...)).)))))).-----.)))).. ( -33.00) >consensus UCAUCAACGCGGGUGUGAUUUGCUUUCAGAUAGUGUGAAAGUAAGUGAAGACUGACUACAGAAAUGAUCCUGUGAAGUAUAGUCUUAAAUU_____UUCAACGCCCAACAAAGGGCUCUA ..........((((((.....(((((((.......))))))).....((((((((((((((........))))..))).)))))))..............)))))).............. (-24.35 = -24.72 + 0.36)
Location | 12,658,507 – 12,658,622 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.14 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -18.24 |
Energy contribution | -18.22 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.46 |
Structure conservation index | 0.67 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12658507 115 - 20766785 AAGAUCCACAGGUUGGGCAGCAAA-----AACUUAAGACUAUACUUCACAGGAUCAUUUCUGUAGUCAGUCUUCACAUACUUUCACACUAGCUGAAAGCCAAGUGCACCCGCGUUGAUGA ...(((.((.((.((.((......-----.....((((((..(((..((((((....))))))))).))))))......((((((.......))))))....)).)).))..)).))).. ( -24.30) >DroVir_CAF1 28349 115 - 1 UAGAGCAUUUUGGUGGGCAUUGAA-----AAGUUAAGACUAUACUUCACAGGAUCAUUUCUGUAGUCAGUCUUCACUUACUUUCACACUUUCUGAAAGCAAGUCACACCCGCGUUGAUGA .....((((...(((((...(((.-----((((.((((((..(((..((((((....))))))))).)))))).)))).((((((.......))))))....)))..)))))...)))). ( -30.50) >DroGri_CAF1 19892 115 - 1 UAGAGCCCAUUGAUGGGCGUUGUA-----AAAUUAAGACUAUACUUCACAGGAUCAUUUCUGUAGUCAGUCUUCACUUACUUUCACACUAUCUGAAAGCACUUCACACCCGCGUUGAUGA .......(((..(((((.((.((.-----.....((((((..(((..((((((....))))))))).))))))......((((((.......))))))......)))))).)))..))). ( -25.80) >DroWil_CAF1 18151 115 - 1 AAGGGGCCAUUGACGGGCGUUGAA-----AAUUUAAGACUAUACUUCACAGGAUCAUUUCUGUAGUCAGUCUUCACUUACUUUCACAUUGAAAGAAAGCCACAUACACCCGCGUUGAUGA .......(((..(((((.((((..-----.....((((((..(((..((((((....))))))))).))))))..(((.(((((.....))))).)))...)).)).)))..))..))). ( -28.60) >DroMoj_CAF1 55233 115 - 1 UAGAGCGCUUCGGUGAGCGUUGAA-----AAUUUAAGACUAUACUUCACAGGAUCAUUUCUGUAGUCAGUCUUCACUUACUUUCACACAAAAUGAAAGCACACCAUACCCACGCUGAUGA .....(((....)))(((((.(..-----.....((((((..(((..((((((....))))))))).))))))......((((((.......))))))..........).)))))..... ( -25.30) >DroAna_CAF1 15565 115 - 1 AACAUCG-----UCGGGCGAUGGAUUGUAUCUUUAAGACUAUACUUCACAGGAUCAUUUCUGUAGUCAGUCUUCACAUACUUUCACAUUAGAUGAAAGCUAAGCACACCCGCGUUGAUGA ..(((((-----.((((.((((((..((((....((((((..(((..((((((....))))))))).))))))...))))..)).))))........((...))...))))...))))). ( -29.30) >consensus AAGAGCCCAUUGAUGGGCGUUGAA_____AAUUUAAGACUAUACUUCACAGGAUCAUUUCUGUAGUCAGUCUUCACUUACUUUCACACUAAAUGAAAGCAAAGCACACCCGCGUUGAUGA .............((((.................((((((..(((..((((((....))))))))).))))))......((((((.......)))))).........))))......... (-18.24 = -18.22 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:09 2006