| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,656,857 – 12,656,961 |
| Length | 104 |
| Max. P | 0.838767 |
| Location | 12,656,857 – 12,656,961 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.30 |
| Mean single sequence MFE | -32.07 |
| Consensus MFE | -22.69 |
| Energy contribution | -22.88 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12656857 104 + 20766785 CGUGCUUCCAUUUUGGGGCACAUUUCAUUAAGUGCACGUAAACGGCUGGCUGUCAACUAGCUGGGGGCGUGGUCCC-AUGCCCCUGCUCACACACACCCCUUAC-C----- .(((((((......)))))))..........(((...(((..(((((((.......)))))))((((((((....)-))))))))))...)))...........-.----- ( -38.50) >DroVir_CAF1 25305 101 + 1 CGUGCUUCCAUUUUGGGGCACAUUUCAUUAAGUGCACGUAAACGGCAGGCUGUCAACUAGCAGUGGGCGUGACAUCUCCGCCCAC------AC---CUCCCAAC-CACCCA .(((((((......)))))))...........(((.((....))))).((((.....)))).(((((((.((....)))))))))------..---........-...... ( -31.40) >DroPse_CAF1 18131 94 + 1 CGUGCUUCCAUUUUGGGGCACAUUUCAUUAAGUGCACGUAAACGGCAGGCUGUCAACUAGCUGUGGGCGUGUUCU--GCGCCCCC------AU---CCCCUCUC-C----- .(((((((......)))))))...........(((.((....)))))(((((.....)))))(.((((((.....--)))))).)------..---........-.----- ( -28.40) >DroEre_CAF1 14005 81 + 1 CGUGCUUCCAUUUUGGGGCACAUUUCAUUAAGUGCACGUAAACGGCUGGCUGUCAACUAGCUGGGGGCGUGGUACC-CCGCC----------------------------- .(((((((......)))))))..........((((((((...(((((((.......)))))))...)))).)))).-.....----------------------------- ( -28.10) >DroYak_CAF1 16646 89 + 1 CGUGCUUCCAUUUUGGGGCACAUUUCAUUAAGUGCACGUAAACGGCUGGCUGUCAACUAGCUGGGGGCGUGGUCCC-CCGCCCAU---------------CUAC-C----- .(((((((......)))))))................(((..(((((((.......))))))).(((((.((...)-))))))..---------------.)))-.----- ( -29.90) >DroAna_CAF1 13763 90 + 1 CGUGCUUCCAUUUUGGGGCACAUUUCAUUAAGUGCACGUAAACGGCAGGCUGUCAACUAGCUGGGGGCGUGGCUUA-ACGCCCCC---------------AUACCC----- .(((((((......)))))))...........(((.((....)))))(((((.....)))))((((((((......-))))))))---------------......----- ( -36.10) >consensus CGUGCUUCCAUUUUGGGGCACAUUUCAUUAAGUGCACGUAAACGGCAGGCUGUCAACUAGCUGGGGGCGUGGUCCC_CCGCCCCC_______________CUAC_C_____ .(((((((......)))))))............((.((....)))).(((((.....)))))..(((((.........)))))............................ (-22.69 = -22.88 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:06 2006