Locus 3832

Sequence ID 2R_DroMel_CAF1
Location 12,652,439 – 12,652,545
Length 106
Max. P 0.647093
window6185

overview

Window 5

Location 12,652,439 – 12,652,545
Length 106
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 73.90
Mean single sequence MFE -36.46
Consensus MFE -21.80
Energy contribution -21.20
Covariance contribution -0.60
Combinations/Pair 1.57
Mean z-score -1.38
Structure conservation index 0.60
SVM decision value 0.24
SVM RNA-class probability 0.647093
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12652439 106 - 20766785
AAUUGACUGCCAGGUUGUCCUUGAACUGCACCGACGUUCGGAUAAUACGGUUGA------CGACCUCCUGAUGGUUGAUUAUCUGGAUAAUACGAA---GGAGGCGGUGGAAAAC-
..((.((((((.(((((((....(((((..(((.....)))......)))))))------)))))((((..((....(((((....))))).)).)---))))))))).))....- ( -31.90)
>DroPse_CAF1 13056 111 - 1
-----UCGGCCUCCCUGUCCGGGGUGGGGAUGGAAGCCCCCAGGCUGCUGUCCACGGAAGGGACUGCCAGGCUGUUGGUUAUAGGGAUCGUAGUGGGGCGAAGGUUGUGGGAAUCU
-----.(((((((((((((((((((..........)))))(((.((((.((((.(....))))).).))).)))..))..)))))))((((......)))).)))))......... ( -44.50)
>DroSec_CAF1 10595 106 - 1
AAUGGACUGCCAGGUUGUCCAUGAACUGCACCACCGUUUGGAUAAAACGGUUGA------CGACCUCCAGAUGGUUGGUUAUCUGGAUAAUACGAA---GGAGGCGGUGGAAAAC-
.....((((((..((((((((.((.....(((((((((((((......((((..------.))))))))))))).))))..)))))))))).(...---.).)))))).......- ( -36.60)
>DroSim_CAF1 12162 106 - 1
AAUGGACUGCCAGGUUGUCCUUGAACUGCACCACCAUUCGGAUAAAACGGUUGA------CGACCUCCAGAUGGUUGGUUAGCUGGAUAAUACGAA---GGAGACGGUGGAAAAC-
...((((.((...)).))))..........(((((.((((.......(((((((------(((((.......)))).)))))))).......))))---(....)))))).....- ( -33.64)
>DroEre_CAF1 9479 106 - 1
AAUGGACCGCCAGCUUGUCCGUGAACUGCACCACCGUUCGGAUAAUACGGUUGA------CGACCUCCAGAUGGUUGAUUUUCUGGAUAAUACGGA---GGGGGCGGUGGGAAGC-
......(((((..(((.((((((.......(.(((((.........))))).).------.....((((((..........))))))...))))))---.)))..))))).....- ( -33.30)
>DroYak_CAF1 11464 106 - 1
AAAUGACCGCCAGGUUGUCCGUGAACUGCACCACCGUUCGGAUAAUACGGUUGA------CGACCUCCAGAUGAUUGAUUAUCUGGGUAAGAGGGA---GGAGGCGGUGGGAAAC-
...(.((((((((((((((.(((.....))).(((((.........))))).))------))))))((((((((....))))))))..........---...)))))).).....- ( -38.80)
>consensus
AAUGGACUGCCAGGUUGUCCGUGAACUGCACCACCGUUCGGAUAAUACGGUUGA______CGACCUCCAGAUGGUUGAUUAUCUGGAUAAUACGAA___GGAGGCGGUGGAAAAC_
.....((((((.((((.......))))...((....((((........(((((.......)))))(((((((((....))))))))).....))))...)).))))))........ (-21.80 = -21.20 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:01 2006