Locus 3831

Sequence ID 2R_DroMel_CAF1
Location 12,650,196 – 12,650,314
Length 118
Max. P 0.713412
window6184

overview

Window 4

Location 12,650,196 – 12,650,314
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.50
Mean single sequence MFE -26.96
Consensus MFE -22.86
Energy contribution -22.53
Covariance contribution -0.33
Combinations/Pair 1.07
Mean z-score -2.09
Structure conservation index 0.85
SVM decision value 0.38
SVM RNA-class probability 0.713412
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12650196 118 + 20766785
GAAC--UCAAAUGCAGACAUCUUGCUGCUGGUAACGUCUUCGUUAGUAUAUCAGUAAGUGUUUCAACGAAUCAAAUAUUCUAUACGGGAAACGGAUAUAAUGAAUAUCUCUGCAUACAAA
....--....(((((((((.(((((((.((.(((((....))))).))...)))))))))..............(((((((((((.(....).).))))..)))))).)))))))..... ( -28.90)
>DroSec_CAF1 8368 120 + 1
GUUCUCUCAAAUGCAGAAACCUUGCUGCUGAUAACGGCUUCGUUAGUAUAUCAGUAAGUGUUUCAACGAAUCCAAUAUACUCUACGUGAAACGUAUAUAAUGAACAUUUCUGCACACAAA
...........((((((((.(((((((.((.(((((....)))))...)).))))))).((((((.((................))))))))..............))))))))...... ( -25.89)
>DroSim_CAF1 9975 118 + 1
GUUC--UCAAAUGCAGAAACCUUGCUGCUGGUAACGGCUUCGUUAGUAUAUCAGUAAGUGUUUCAACGAAUCCAAUAUACUCUACGUGAAACGUAUAUAAUGAACAUUACUGCACACAAA
....--.....((((((((((((((((.((.(((((....))))).))...))))))).)))))........((.((((...((((.....)))))))).))........))))...... ( -26.10)
>consensus
GUUC__UCAAAUGCAGAAACCUUGCUGCUGGUAACGGCUUCGUUAGUAUAUCAGUAAGUGUUUCAACGAAUCCAAUAUACUCUACGUGAAACGUAUAUAAUGAACAUUUCUGCACACAAA
...........((((((((((((((((.((.(((((....))))).))...))))))).)))))..........((((((............))))))............))))...... (-22.86 = -22.53 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:00 2006