Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,648,822 – 12,648,916 |
Length | 94 |
Max. P | 0.886261 |
Location | 12,648,822 – 12,648,916 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -19.03 |
Energy contribution | -21.12 |
Covariance contribution | 2.09 |
Combinations/Pair | 1.29 |
Mean z-score | -2.32 |
Structure conservation index | 0.58 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12648822 94 - 20766785 UCGGGGUCCGAGAGG----CAUUAGCUUGUUAGUUCUACA------------ACCUGCUGGCAAAUGUGCCAAUAUGUUUGCACGCUGAUAAGGCCUACAUGGCACCGAA ((((.(((....(((----(((((((((((((((......------------....))))))))..((((.((....)).))))))))))...))))....))).)))). ( -31.50) >DroSec_CAF1 7269 94 - 1 UCGGGGUCCGAGAGG----CAUUAGCUUGUUAGUUCUACA------------ACCUGCUGGCAAAUGUGCGAAUAUGUUUGCACGCUGAUAAGGCCUACAUGGCACCCAA ...(((((((.((((----(((((((((((((((......------------....))))))))..(((((((....)))))))))))))...)))).).))).)))).. ( -36.50) >DroSim_CAF1 8877 94 - 1 UCGGGGUCCGAGAGG----CAUUAGCUUGUUAGUUCUACA------------ACCUGCUGGCAAAUGUGCGAAUAUGUUUGCACGCUGAUAAGGCCUACAUGGCACCCAA ...(((((((.((((----(((((((((((((((......------------....))))))))..(((((((....)))))))))))))...)))).).))).)))).. ( -36.50) >DroEre_CAF1 7031 93 - 1 UCGGGGUCCGAGAGG----CAUUAGCUUGUCAGUUGUACA------------ACCUGUUGGCAAAUGUGCGGGUAUAUUUGCACGCUGAUAAGG-CUACAUGGCACCCAA ..(((((((....))----(((((((((((((((.((.((------------(....)))(((((((((....))))))))))))))))))).)-))).))))).))).. ( -33.50) >DroYak_CAF1 9301 94 - 1 UCGGGGUCCGAGAGG----CAUUAGCUUAUUAGUUCUACA------------ACCUACUGGCAAAUGUGCGAGUAUACAUGCACGCUGAUAAGGUCUACAUGGCACCCAA ...(((((((.((((----(.....(((((((((......------------...((((.(((....))).)))).........))))))))))))).).))).)))).. ( -27.97) >DroPer_CAF1 10496 100 - 1 UCGCAGUCCCAGAGAGCUUUGUUUGCUUGUAAGUUCUACUUCUGGCAAGCACAGCUGCUGGCAAGAGU------GUAUUU----GGCGAUAAGGUGAACAUGGAAACUAA ((((.((((((((.((((.((((((((.(.(((.....)))).)))))))).))))(((......)))------...)))----)).)))...))))....(....)... ( -29.20) >consensus UCGGGGUCCGAGAGG____CAUUAGCUUGUUAGUUCUACA____________ACCUGCUGGCAAAUGUGCGAAUAUAUUUGCACGCUGAUAAGGCCUACAUGGCACCCAA ...(((((((..(((.....((((((((((((((......................))))))))..(((((((....)))))))))))))....)))...))).)))).. (-19.03 = -21.12 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:59 2006