Locus 3829

Sequence ID 2R_DroMel_CAF1
Location 12,640,588 – 12,640,708
Length 120
Max. P 0.583362
window6182

overview

Window 2

Location 12,640,588 – 12,640,708
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -54.70
Consensus MFE -54.65
Energy contribution -54.43
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.41
Structure conservation index 1.00
SVM decision value 0.10
SVM RNA-class probability 0.583362
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12640588 120 - 20766785
GAGAAGGAGGACAUCACGCGGGGAGUGCCGAAUGGGUGCGCCAGCAUGAAGGCGGAGGCCAUCUUGUACUGCUUGGGCACCUUGUAGGUCAGCACGUCGGCGCCUCCUGCUCCAUGUCCG
........((((((...(((((..(((((((..((((((.((((((.((.(((....))).))......))).)))))))))(((......)))..)))))))..)))))...)))))). ( -54.10)
>DroSec_CAF1 38789 120 - 1
GAGAAGGAGGACAUCACGCGGGGAGUGCCGAAGGGGUGCGCCAGCAUGAAGGCGGAGGCCAUCUUGUACUGCUUGGGCACCUUGUAGGUCAGCACGUCGGCGCCUCCUGCUCCGUGUCCG
........((((((...(((((..(((((((.(((((((.((((((.((.(((....))).))......))).))))))))))((......))...)))))))..)))))...)))))). ( -55.00)
>DroEre_CAF1 34239 120 - 1
GAGAAGGAGGACAUCACGCGGGGAGUGCCGAAGGGGUGCGCCAGCAUGAAGGCGGAGGCCAUCUUGUACUGCUUGGGCACCUUGUAGGUCAGCACGUCGGCGCCUCCUGCUCCGUGUCCG
........((((((...(((((..(((((((.(((((((.((((((.((.(((....))).))......))).))))))))))((......))...)))))))..)))))...)))))). ( -55.00)
>consensus
GAGAAGGAGGACAUCACGCGGGGAGUGCCGAAGGGGUGCGCCAGCAUGAAGGCGGAGGCCAUCUUGUACUGCUUGGGCACCUUGUAGGUCAGCACGUCGGCGCCUCCUGCUCCGUGUCCG
........((((((...(((((..(((((((..((((((.((((((.((.(((....))).))......))).)))))))))(((......)))..)))))))..)))))...)))))). (-54.65 = -54.43 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:58 2006