| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,639,291 – 12,639,392 |
| Length | 101 |
| Max. P | 0.632453 |
| Location | 12,639,291 – 12,639,392 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.44 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -21.51 |
| Energy contribution | -23.27 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12639291 101 + 20766785 UU-------------------AGAACAAUAUAAAUUACUCCUUGUAGGCCAAAGUUCAGAUUGAUCACGCUUCUAGUGGCGUGCAAGUCAAGUGGCCAAUAAAUCUCCAAUAUCAACCAA ..-------------------....................((((.(((((.......((((...((((((......))))))..))))...))))).)))).................. ( -20.70) >DroSec_CAF1 37469 120 + 1 UUAUGUUCUAGUUCUAGUUCUAGAGCAAUAUAAAUUACUCCUUGUAGGCCAAAGUUCAGAUUGAUCACGCUUCUAGUGGCGUGCAAGUCAAGUGGCCAAUAAAUCUCCAAUAUCAACCAA ...((((((((........))))))))..............((((.(((((.......((((...((((((......))))))..))))...))))).)))).................. ( -30.30) >DroEre_CAF1 32935 120 + 1 UUAUGUUUAUGUUCCAGUUCUGGAACAAUAUAAAUUACUCCUGGUAGGCCAAAGUUCGGAUGGAUCACGCUUCUGGUGGCGUGCAAGUCAAGUGGCCAAUAAAUCUCCAGUAUCAACCAA ((((((...(((((((....))))))))))))).......((((..(((((.......(((....((((((......))))))...)))...))))).........)))).......... ( -32.10) >consensus UUAUGUU___GUUC_AGUUCUAGAACAAUAUAAAUUACUCCUUGUAGGCCAAAGUUCAGAUUGAUCACGCUUCUAGUGGCGUGCAAGUCAAGUGGCCAAUAAAUCUCCAAUAUCAACCAA ..........((((((....)))))).........(((.....)))(((((.......((((...((((((......))))))..))))...)))))....................... (-21.51 = -23.27 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:57 2006