Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,635,926 – 12,636,039 |
Length | 113 |
Max. P | 0.733345 |
Location | 12,635,926 – 12,636,039 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 98.82 |
Mean single sequence MFE | -36.60 |
Consensus MFE | -36.72 |
Energy contribution | -36.50 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.59 |
Structure conservation index | 1.00 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12635926 113 + 20766785 AUGCCGGAUGUCUCUGGGUAAUUUAGAUAGCUGCAGUUCUUGUUGCUGCCGCUCAAAGUUGCAUAAUGUCACUUUGAAAGUGUCGCAGGGCAAAGGACAUGCGAGCACCCACA .(((((.(((((.((..((......((((((.(((((.......))))).))(((((((.((.....)).)))))))...)))).....))..))))))).)).)))...... ( -37.10) >DroSec_CAF1 28684 113 + 1 AUGCCGGAUGUCUCUGGGUAAUUUAGAUAGCUGCAGUUCUUGUUGCUGCCGCUCAAAGUUGCAUAAUGUCACUUUGAAAGUGUUGCAGGGCAAAGGACAUGCGAGCACCCACA .(((((.(((((.((..((......((((((.(((((.......))))).))(((((((.((.....)).)))))))...)))).....))..))))))).)).)))...... ( -35.30) >DroEre_CAF1 29610 113 + 1 AUGCCGGAUGUCUCUGGGUAAUUUAGAUAGCUGCAGUUCUUGCUGCUGCCGCUCAAAGUUGCAUAAUGUCACUUUGAAAGUGUCGCAGGGCAAAGGACAUGCGAGCACCCACA ...(((((....)))))............(((((((((((((((.((((((((((((((.((.....)).)))))))..)))..))))))).)))))).))).)))....... ( -37.40) >consensus AUGCCGGAUGUCUCUGGGUAAUUUAGAUAGCUGCAGUUCUUGUUGCUGCCGCUCAAAGUUGCAUAAUGUCACUUUGAAAGUGUCGCAGGGCAAAGGACAUGCGAGCACCCACA .(((((.(((((.((..((......((((((.(((((.......))))).))(((((((.((.....)).)))))))...)))).....))..))))))).)).)))...... (-36.72 = -36.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:53 2006