Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,610,989 – 12,611,081 |
Length | 92 |
Max. P | 0.890191 |
Location | 12,610,989 – 12,611,081 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 76.95 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -13.44 |
Energy contribution | -13.44 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.56 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890191 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12610989 92 - 20766785 AUAACACCGAAAAGUCAAAUC-----GAUUGUUGCAAUUUGAGACUCUCC-------GAAAGCGAAAAUUGCAGCGGAAGAG-GCGGCCAAUCGGCCAU----UACUAA .............(((...((-----..((((((((((((..(.((....-------...)))..))))))))))))..)))-))((((....))))..----...... ( -23.90) >DroVir_CAF1 5223 81 - 1 AUAGUG-AGAGAAGUCAAAUC-----GAUUGUUGCAAUUUGAGACAC-----------------GAAAUUGCAGCGGAAGAG-GCGACCAAUCGGGCAU----UACUUA .(((((-.((...(((...((-----..((((((((((((.......-----------------.))))))))))))..)).-..)))...))...)))----)).... ( -21.90) >DroPse_CAF1 3837 101 - 1 AUAACGCCGAAAAGUCAAUUCGAUUCGAUUGUUGCAAUUUGAGACACAGA-------G-AAUCGAAAAUUGCAGCGGAAGAGGGCGGCCAAUCGGGCAUUCAUUACUGA ....(((((((.......)))..(((..((((((((((((..((......-------.-..))..))))))))))))..)))))))(((.....)))............ ( -27.00) >DroWil_CAF1 7295 76 - 1 AUA-------AAGACCCAAUC-----GAUUGUUGCAAUUUGAGACA----------------UGAAAAUUGCAGCGGAAGAG-GCGACCAAUCGGCCAU----UACUUU ..(-------(((......((-----..((((((((((((......----------------...))))))))))))..))(-((((....)).)))..----..)))) ( -18.10) >DroAna_CAF1 3874 99 - 1 AUAACGCCGAAAAGUCAAAUC-----GAUUGUUGCAAUUUGAGACACAGAGAAGAAAGAAACCGAAAAUUGCAGCGGAAGAG-GCGGCCAAUCAGGCGU----UACUUU .(((((((((...(((...((-----..((((((((((((..(...................)..))))))))))))..)).-..)))...)).)))))----)).... ( -26.61) >DroPer_CAF1 9180 96 - 1 AUAACGCCGAAAAGUCAAUUC-----GAUUGUUGCAAUUUGAGACACAGA-------G-AAUCGAAAAUUGCAGCGGAAGAGGGCGGCCAAUCGGGCAUUCAUUACUGA ....((((((....))..(((-----..((((((((((((..((......-------.-..))..))))))))))))..)))))))(((.....)))............ ( -26.40) >consensus AUAACGCCGAAAAGUCAAAUC_____GAUUGUUGCAAUUUGAGACACAGA_______G_AA_CGAAAAUUGCAGCGGAAGAG_GCGGCCAAUCGGGCAU____UACUUA ..........................((((((((((((((.........................))))))))))((..(....)..))))))................ (-13.44 = -13.44 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:48 2006