Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,599,522 – 12,599,629 |
Length | 107 |
Max. P | 0.575047 |
Location | 12,599,522 – 12,599,629 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 93.98 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -19.08 |
Energy contribution | -18.88 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.26 |
Structure conservation index | 0.85 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12599522 107 - 20766785 CGACUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGUUCGACAAUGCAGCUGCAGAGGG-AAAAAACAACUUUAAUUGAUUCCGCUGAAAGGCAAAUGCU .......(((((((.....((((((((.....((((....((((.....)))).))))..(....).-....))))))))..)))))))..(((....)))....... ( -19.90) >DroSec_CAF1 26982 108 - 1 CAGCUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUAGACAAUGCAGCUGCAGAGGGGAAAAAACAACUUUAAUUGAUUCCGCUGAAAGGCAAAUGCU ((((...(((((((.....((((((((......(((.((..((((........)))).))))).........))))))))..)))))))..))))...(((....))) ( -22.46) >DroSim_CAF1 26258 108 - 1 CAGCUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUAGACAAUGCAGCUGCAGAGGGAAAAAAACAACUUUAAUUGAUUCCGCUGAAAGGCAAAUGCU ((((...(((((((.....((((((((......(((.((..((((........)))).))))).........))))))))..)))))))..))))...(((....))) ( -22.46) >DroEre_CAF1 24405 105 - 1 CGUUUGCAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUCGACAAUGCAGCUGCAGAGGGAAA--AACAACUCUAA-UGAUUCCGCUGAAAGGCAAAUGCU (((((((..(((...((((((((((((......(((.((..((((........)))).))))).......--)))))))....-)))))....)))...))))))).. ( -23.02) >DroYak_CAF1 25381 108 - 1 CGGUUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUCGACAAUGCAGCUGCAGAGGAAAAACAACAACUCUAAUUGAUUCCGCUGAAAGGCAAAUGCU .((....(((((((.((....((((((......(((.((..((((........)))).)))))......))))))....)).)))))))))(((....)))....... ( -23.80) >consensus CGGCUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUCGACAAUGCAGCUGCAGAGGGAAAAAAACAACUUUAAUUGAUUCCGCUGAAAGGCAAAUGCU .......(((((((.((...(((((((......(((.((..((((........)))).))))).........))))))))).)))))))..(((....)))....... (-19.08 = -18.88 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:44 2006