| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,597,823 – 12,597,914 |
| Length | 91 |
| Max. P | 0.515879 |
| Location | 12,597,823 – 12,597,914 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 75.07 |
| Mean single sequence MFE | -17.76 |
| Consensus MFE | -10.38 |
| Energy contribution | -10.43 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.515879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12597823 91 + 20766785 UUUUUCAGCUAAAGAAUAUUU-UCAGACCUGAAGAUGUCUUUCUAUAU--CC--------GCAGAUAAAGUAAUCUAAUGACACGCUUGUCGAUAUCUA-----UGU ..........(((((.(((((-(((....)))))))))))))..((((--(.--------..((((......))))...((((....)))))))))...-----... ( -15.10) >DroSec_CAF1 25301 92 + 1 UUUUCCAGCCAAACAAAAUUAAGCAGACGCGAAGAUGUCUUUCUAUAU--CC--------GCAGAUAAACUAAUCUAAUGACACGCUUGUCGAUAUCUA-----UGU ............................(((.(((((((.........--..--------..((((......))))...((((....))))))))))).-----))) ( -13.50) >DroSim_CAF1 24593 91 + 1 UUUUCCAGCCAAAGAAUAUUU-UCAGACCUGAAGAUGUCUUUCUAUAU--CC--------GCAGAUAAACUAAUCUAAUGGCACGCUUGUCGAUAUCUA-----UGU .......((((((((.(((((-(((....)))))))))))).......--..--------..((((......))))..)))).................-----... ( -15.80) >DroEre_CAF1 22727 80 + 1 UUU-----CC------UAUUU-UCAGACCUGAAGAUGUCUUUGCAUAU--CC--------GCAGAUAAGCUAAUCUAAUGACACGCUUGUCGAUAUCUA-----UGU ...-----..------.....-(((....)))(((((((..(((....--..--------)))(((((((...((....))...)))))))))))))).-----... ( -19.70) >DroYak_CAF1 23637 86 + 1 UAA-----CCAAACGAUAUUU-UCAGGCCUGAAGAUGUCUUUCUAUAU--CC--------GCAGAUAAAAUAAUCUAACGACACGCUUGUCGAUAUCUA-----UGU ...-----......((((((.-.((((((((..(((((......))))--).--------.))).........((....))...)))))..))))))..-----... ( -18.20) >DroPer_CAF1 23323 106 + 1 UUGACCAAGUAGAAAAUGUUC-UACUCCAUGAAGAUGUCACUCCAUAGAUACGAGUGCCUAUGGAUAGGCUAAUCUAAUAACACGCCUGUCAAUAUCUAUAGUAUGU .......(((((((....)))-)))).((((.((((((.....(((((.((....)).)))))(((((((..............))))))).))))))....)))). ( -24.24) >consensus UUUUCCAGCCAAACAAUAUUU_UCAGACCUGAAGAUGUCUUUCUAUAU__CC________GCAGAUAAACUAAUCUAAUGACACGCUUGUCGAUAUCUA_____UGU ................................(((((((.......................((((......))))...((((....)))))))))))......... (-10.38 = -10.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:43 2006