Locus 3816

Sequence ID 2R_DroMel_CAF1
Location 12,593,703 – 12,593,793
Length 90
Max. P 0.620317
window6165

overview

Window 5

Location 12,593,703 – 12,593,793
Length 90
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 90.11
Mean single sequence MFE -19.55
Consensus MFE -16.09
Energy contribution -16.53
Covariance contribution 0.45
Combinations/Pair 1.16
Mean z-score -1.94
Structure conservation index 0.82
SVM decision value 0.18
SVM RNA-class probability 0.620317
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12593703 90 - 20766785
CCUCACAAAUUGAAUUGCUAAUCGUUUGGCUUCACCU----------AUCGA---UCGAAGGUGUUCCAAAUCCAAUUGGAAAUUACCUACCUCAAUUAGCGG
...............(((((((..(((((...(((((----------.((..---..)))))))..)))))(((....)))..............))))))). ( -20.00)
>DroPse_CAF1 19218 103 - 1
AUUCACAAAUCGAUUCGCUAAUCGUUUGGCUUCACCUCCGACCCCAAAUCGAGCCUCGAACCUACUCCGAAUCCGAUUGGAAAUUACCUACCUCAAUUAACGA
.(((...((((((((((....((((((((..((......))..))))).))).....((......))))))).))))).)))..................... ( -17.50)
>DroSec_CAF1 21321 90 - 1
CCUCACAAAUUGAAUUGCUAAUCGUUUGGCUUCACCU----------AUCGA---UCGAAGGUGUUCCAAAUCCAAUUGGAAAUUACCUACCUCAAUUAGCGG
...............(((((((..(((((...(((((----------.((..---..)))))))..)))))(((....)))..............))))))). ( -20.00)
>DroSim_CAF1 18944 90 - 1
CCUCACAAAUUGAAUUGCUAAUCGUUUGGCUUCACCU----------AUCGA---UCGAAGGUGUUCCAAAUCCAAUUGGAAAUUACCUACCUCAAUUAGCGG
...............(((((((..(((((...(((((----------.((..---..)))))))..)))))(((....)))..............))))))). ( -20.00)
>DroEre_CAF1 18649 90 - 1
CCUCACAAAUUGAAUUGCUAAUCGUUUGGCUUCACCU----------AUCGA---UCGAAGGUGUUCCAAAUCCAAUUGGAAAUUACCUACCUCAAUUAGCGG
...............(((((((..(((((...(((((----------.((..---..)))))))..)))))(((....)))..............))))))). ( -20.00)
>DroYak_CAF1 18688 90 - 1
CCUCACAAAUUGAAUUGCUAAUCGUUUGGCUUCACCU----------AUCGA---UCCUAGGUGUUCCAAAUCCAAUUGGAAAUUACCUACCUCAAUUAGCGG
...............(((((((..(((((...(((((----------(....---...))))))..)))))(((....)))..............))))))). ( -19.80)
>consensus
CCUCACAAAUUGAAUUGCUAAUCGUUUGGCUUCACCU__________AUCGA___UCGAAGGUGUUCCAAAUCCAAUUGGAAAUUACCUACCUCAAUUAGCGG
..............((((((((.(...((...................(((.....)))(((((((((((......))))))..))))).)).).)))))))) (-16.09 = -16.53 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:41 2006