| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,569,070 – 12,569,162 |
| Length | 92 |
| Max. P | 0.608922 |
| Location | 12,569,070 – 12,569,162 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.12 |
| Mean single sequence MFE | -27.37 |
| Consensus MFE | -17.82 |
| Energy contribution | -17.93 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12569070 92 + 20766785 GCACACGCGGCGACAAUGGAUACAAAUUAAUUGUGGCCGAUGGACCCAACGGCUAUGUGCCCGGCAAGACGUAUAAUUGUAAGUCGGGAAGG---------------- ((((...((((.(((((.(((....))).))))).))))((((.((....))))))))))(((((...(((......)))..))))).....---------------- ( -30.60) >DroVir_CAF1 6136 105 + 1 GCACACGCGGCGACAAUGGAUACAAAUUAAUUGUAGCCGAUGGACCCAACGGCUAUGUGCCCGGCAAGGCAUACAACUGUAAGUCUU--AGGUGGUUCUU-GAGUAAA ((((...((((.(((((.(((....))).))))).))))((((.((....))))))))))(((.((((((.(((....))).)))))--.).))).....-....... ( -30.30) >DroGri_CAF1 7174 99 + 1 GCACACGAGGCGACAAUGGAUACAAAUUAAUUGUGGCUGAUGGACCCAACGGAUAUGUGCCCGGCAAGGCUUACAACUGUAAGU--------UCGAUCCGAGCACAA- .....((.(((.(((((.(((....))).))))).)))..((....)).))....(((((.(((...(((((((....))))))--------)....))).))))).- ( -28.20) >DroEre_CAF1 4977 92 + 1 GCACACGCGGCGACAAUGGAUACAAAUUAAUUGUGGCCGAUGGACCCAACGGAUAUGUGCCCGGCAAGACAUAUAAUUGUAAGUCAGCUACC---------------- (((((((((((.(((((.(((....))).))))).)))).))..((....))...)))))..(((..(((.(((....))).))).)))...---------------- ( -25.10) >DroWil_CAF1 5165 96 + 1 GUACACGAGGCGAUAAUGGAUACAAAUUAAUUGUGGCCGAUGGACCCAAUGGCUAUGUUCCCGGCAAGACCUACAACUGUAAGUGUGAUAUA------------UAAA .(((((..(((.....(((..(((.........((((((.((....)).)))))))))..)))....).))(((....))).))))).....------------.... ( -19.40) >DroAna_CAF1 4829 90 + 1 GCACACGCGGUGACAAUGGAUACAAACUAAUUGUCGCCGAUGGACCCAACGGAUAUGUGCCCGGCAAGACAUAUAAUUGUAAGUCGG--AGG---------------- (((((((((((((((((............)))))))))).))..((....))...)))))(((((...(((......)))..)))))--...---------------- ( -30.60) >consensus GCACACGCGGCGACAAUGGAUACAAAUUAAUUGUGGCCGAUGGACCCAACGGAUAUGUGCCCGGCAAGACAUACAACUGUAAGUCGG__AGG________________ (((((((((((.(((((.(((....))).))))).)))).))..((....))...))))).......(((.(((....))).)))....................... (-17.82 = -17.93 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:33 2006