Locus 381

Sequence ID 2R_DroMel_CAF1
Location 2,362,311 – 2,362,426
Length 115
Max. P 0.991366
window748

overview

Window 8

Location 2,362,311 – 2,362,426
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 95.57
Mean single sequence MFE -35.62
Consensus MFE -31.72
Energy contribution -31.16
Covariance contribution -0.56
Combinations/Pair 1.10
Mean z-score -1.93
Structure conservation index 0.89
SVM decision value 2.26
SVM RNA-class probability 0.991366
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2362311 115 + 20766785
AUGGAGCCGCACCGUCCAUUGAAUCUGCAAUCUCGACUGCUGCAAAACUCCUGUGGUCGUCCGUUAAUGGUGAUGUAUUUUUACUUUGAUUGCGUCCAUAGUUGCAGUGGCAAAC
.....((((((...((....))...)))..........(((((((.....((((((.(((..(((((.(((((.......)))))))))).))).)))))))))))))))).... ( -32.50)
>DroSec_CAF1 11847 115 + 1
AUCGAGCCGCACCGUCCAUUGAAUCUGCAAUCUCGACUGCUGCAAAACUCCUGUGGUCGCCCGUUAAUGGUGAUGUAUUUUUACUUUGAUUGCGUCCAUAGUUGCAGUGGCAAAC
.(((((..(((...((....))...)))...)))))(..((((((.....((((((.(((..(((((.(((((.......)))))))))).))).))))))))))))..)..... ( -36.10)
>DroSim_CAF1 11958 115 + 1
AUCGAGCCGCACCGUCCAUUGAAUCUGCAAUCUCGACUGCUGCAAAACUCCUGUGGUCGCCCGUUAAUGGUGAUGUAUUUUUACUUUGAUUGCGUCCAUAGUUGCAGUGGCAAAC
.(((((..(((...((....))...)))...)))))(..((((((.....((((((.(((..(((((.(((((.......)))))))))).))).))))))))))))..)..... ( -36.10)
>DroEre_CAF1 11689 115 + 1
AUGGCGCCGCACCAUCCAUUGAAUCUGCAAUCUCGACUGCAGCAAAACUCCUGUGGUCGCCCGUUAAUGGUGAUGUAUUUUUACUUUGAUUGCGUCCACAGUUGCAGUGGCAAAC
.....(((((...............((((........))))((((.....((((((.(((..(((((.(((((.......)))))))))).))).)))))))))).))))).... ( -35.10)
>DroYak_CAF1 11320 115 + 1
AUGGUGCCGCAGCAGCCAUUGAAUCUGCAAUCUCGAUUGCAGCAAAACUCUUGUGGUCGUCCGUUAAUGGUGAUGUAUUUUUACUUUGAUUGCGUCCAUAGUUGCAGUGGCAAAC
....((((((.(((((........(((((((....))))))).........(((((.(((..(((((.(((((.......)))))))))).))).)))))))))).))))))... ( -38.30)
>consensus
AUGGAGCCGCACCGUCCAUUGAAUCUGCAAUCUCGACUGCUGCAAAACUCCUGUGGUCGCCCGUUAAUGGUGAUGUAUUUUUACUUUGAUUGCGUCCAUAGUUGCAGUGGCAAAC
.....(((((................(((........))).((((.....((((((.(((..(((((.(((((.......)))))))))).))).)))))))))).))))).... (-31.72 = -31.16 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:00 2006