Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,549,295 – 12,549,394 |
Length | 99 |
Max. P | 0.500000 |
Location | 12,549,295 – 12,549,394 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 81.29 |
Mean single sequence MFE | -27.52 |
Consensus MFE | -12.93 |
Energy contribution | -13.22 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.35 |
Mean z-score | -2.48 |
Structure conservation index | 0.47 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12549295 99 - 20766785 ---UUCCUUUUUC-------AAAUUCAAAAUGAUUUUGCACAGGCUCAUUAAGCUUGUGCUAUUUUCUAGUACCAUUUACUUGGUCAAAGAACUAGGAGUUUGGGAGGA ---.(((((..((-------((((((...........(((((((((.....)))))))))......(((((((((......))))......)))))))))))))))))) ( -32.70) >DroSec_CAF1 10690 99 - 1 ---UUCCUUUUUC-------AAAUUCAAAAUGAUUUUGAACAGGCUCAUUAAGCUUGUGCUAUUUUCUAGUACCAUUUACUUGGUCAAAGCACUAGGAGUUUGGGAGGA ---.(((((((((-------(((.((.....)).))))))(((((((....(((....))).....(((((((((......))))......)))))))))))))))))) ( -28.00) >DroSim_CAF1 10678 99 - 1 ---UUCCUUUUUC-------AAAUUCAAAAUGAUUUUGAACAGGCUCAUUAAGCUUGUGCUAUUUUCCAGUACCAUUUACUUGGUCAAAGCACUAGGAGUUUGGGAGGA ---.(((((((((-------(((.((.....)).))))))(((((((......((.(((((.....((((((.....))).)))....))))).))))))))))))))) ( -26.80) >DroEre_CAF1 10524 98 - 1 ---UUCCU-UUUC-------AAAUUCAAAAUGAUCAUGCGCAGGCUCAUGAAGCUUGUGCUAUUUUCUAGUACCAUUUACUUGGUCAAAGAACUAGGAGUUUGGGACGA ---...(.-(..(-------((((((...........(((((((((.....)))))))))......(((((((((......))))......))))))))))))..).). ( -29.60) >DroYak_CAF1 10761 98 - 1 ---UUCCU-UUUC-------AAAUUCAAAAUGGUCAUACGCAGCCUCAUAAAGCUUGUGCUAUUUUCUACUACCAUUUACUUGGCCAAAGAACUAGGAGUUUGGGACGA ---...(.-(..(-------((((((.((((((.((((.((...........)).))))))))))(((....(((......)))....))).....)))))))..).). ( -19.50) >DroAna_CAF1 10105 109 - 1 GAAUUCCGAGUUCUAGGCAAGAUUUCAAUAUGAUUUUGGGCAGAUUCGUAAGGUUCUUGGUCUUCGCCAGCACUAUCUACUUGGCCAAGGAAUUCGGCAGUUGGGAUGA .(((((((((((((...(((((((.......)))))))((((((..(....)..)))((((....))))..............)))..))))))))).))))....... ( -28.50) >consensus ___UUCCUUUUUC_______AAAUUCAAAAUGAUUUUGCACAGGCUCAUUAAGCUUGUGCUAUUUUCUAGUACCAUUUACUUGGUCAAAGAACUAGGAGUUUGGGAGGA ....((((............((((((.............(((((((.....)))))))........(((((((((......))))......)))))))))))))))... (-12.93 = -13.22 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:26 2006