| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,548,766 – 12,548,881 |
| Length | 115 |
| Max. P | 0.756292 |
| Location | 12,548,766 – 12,548,881 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 96.55 |
| Mean single sequence MFE | -15.28 |
| Consensus MFE | -15.21 |
| Energy contribution | -14.77 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.62 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12548766 115 - 20766785 AAACUUAGUAAACAUAAUCUUUAACUUUUGAACAAUAUUCAAAAUUCUAUUGAAA-CUAAAGUCAAAAAUGCAUUAAAAAUUUUGACUACCCAUUUUCAUCCACAUCAAGGGUCAA ....(((((................(((((((.....)))))))(((....))))-))))((((((((.(........).))))))))((((.................))))... ( -15.03) >DroSec_CAF1 10158 116 - 1 AAACUUAGUAAACAUAACCUUUAACUUUUGAACAAUAUUCAAAAUUCUGUUGAAAUCUAAAGUCAAAAAUGCAUUAAAAAUUUUGACUAACCAUUUUCGUCCACAUCAAGGGUCAA ................((((((...(((((((.....))))))).......((((.....((((((((.(........).))))))))......)))).........))))))... ( -15.40) >DroSim_CAF1 10146 116 - 1 AAACUUAGUAAACAUAACCUUUAACUUUUGAACAAUAUUCAAAAUUCUGUUGAAAUCUGAAGUCAAAAAUGCAUUAAAAAUUUUGACUAACCAUUUUCGUCCACAUCAAGGGUCAA ................((((((...(((((((.....))))))).......((((.....((((((((.(........).))))))))......)))).........))))))... ( -15.40) >consensus AAACUUAGUAAACAUAACCUUUAACUUUUGAACAAUAUUCAAAAUUCUGUUGAAAUCUAAAGUCAAAAAUGCAUUAAAAAUUUUGACUAACCAUUUUCGUCCACAUCAAGGGUCAA ................((((((...(((((((.....)))))))......(((((.....((((((((.(........).))))))))......)))))........))))))... (-15.21 = -14.77 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:25 2006