| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,548,051 – 12,548,164 |
| Length | 113 |
| Max. P | 0.525919 |
| Location | 12,548,051 – 12,548,164 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.29 |
| Mean single sequence MFE | -36.85 |
| Consensus MFE | -20.68 |
| Energy contribution | -18.75 |
| Covariance contribution | -1.93 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12548051 113 - 20766785 -UAAAAUGGUUGUGGGCCUGAUUUUGCGAGCGGGCGUUGUCUAUGCUGUGGUAAUGGUCACCAAGAACUACGGCGUGUGGGAAUCUCCAAACAAGACGCAAGAUGUGUACGAUG -.......((((((.((...(((((((.(((....)))((((..((((((((..(((...)))...))))))))((.((((....)))).)).))))))))))))).)))))). ( -34.70) >DroVir_CAF1 8584 114 - 1 CCAAAAUGAUUAUAGAUCUCGCAUUGCGCACAGGAAUCGUGGUUGCUGUAAUAAUGGCCACCAAACGAUAUGACGUUUGGGAUUCGUCGGAUGAAGCUCAAGAGGUUUACCACU ............((((((((...(((.((((((.(((....))).)))).....((((..(((((((......))))))).....))))......)).)))))))))))..... ( -28.10) >DroPse_CAF1 9916 114 - 1 ACAGGAUGAUAAUCGACUUGAUUGUGCGGGCAGGCGUGGUUUAUGCUGUGGUUGUGGCCACCAAACACUUCGGUGUAUGGGGCCCGUCGGAUGAAACGGAAGAGCUGUACAAUA .((((.((.....)).))))(((((((((((((.((..((....))..)).))))((((.(((.((((....)))).)))))))............(....)..))))))))). ( -43.50) >DroEre_CAF1 9327 113 - 1 -UAAAAUGGUAGUGGGCCUGAUUUUGCGAGCGGGCGUUGUCUAUGCUGUGGUAAUGGUCACCAAGAACUACGGCGUGUGGGGAUCGCCGAACAAGACGCAGGAUGUGUACGAUG -..........(((.((...((((((((....((((((.(((((((((((((..(((...)))...))))))))))).)).)).))))........)))))))))).))).... ( -34.20) >DroYak_CAF1 9551 113 - 1 -UAAAAUGGUUGUGGGCCUGAUUUUGCGAGCGGGCGUCGUCUAUGCUGUGGUAAUGGUCACCAAAAACUACGGCGUGUGGGAAUCGCCAGACAAGACGCAGGAUGUAUACGAUG -.......((((((..((((.((((((..((((...((.(.(((((((((((..(((...)))...))))))))))).).)).))))..).)))))..)))).....)))))). ( -36.40) >DroPer_CAF1 9926 114 - 1 ACAGGAUGAUAAUCGACUUGAUUGUGCGGGCAGGCGUGGUUUAUGCUGUGGUUGUGGCCACCAAACACUUCGGUGUAUGGGGCCCGUCGGAUGAAACGGAGGAGCUGUACAAUA .((((.((.....)).))))(((((((((((((.((..((....))..)).))))((((.(((.((((....)))).)))))))(.((.(......).)).)..))))))))). ( -44.20) >consensus _CAAAAUGAUAAUGGACCUGAUUUUGCGAGCAGGCGUCGUCUAUGCUGUGGUAAUGGCCACCAAAAACUACGGCGUGUGGGAAUCGCCGGACAAAACGCAAGAGGUGUACGAUG ......((((......((((((..(((......)))..)))(((((((((((..(((...)))...))))))))))).)))....))))......((((.....))))...... (-20.68 = -18.75 + -1.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:24 2006