Locus 3801

Sequence ID 2R_DroMel_CAF1
Location 12,545,630 – 12,545,746
Length 116
Max. P 0.970290
window6147

overview

Window 7

Location 12,545,630 – 12,545,746
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.70
Mean single sequence MFE -23.81
Consensus MFE -19.74
Energy contribution -19.66
Covariance contribution -0.08
Combinations/Pair 1.16
Mean z-score -2.04
Structure conservation index 0.83
SVM decision value 1.66
SVM RNA-class probability 0.970290
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12545630 116 + 20766785
ACAGAGACGGUAGUCACCAAAUCAGUGUGUAUAAAAAGGCGAUAAAAGGUUUUACAAGAUUAGUAAAAUGGUAUUGGUGACAACUAAUCUGAGUAAAUGAAGAUAAAGAUUUGAUA----
.((((...(((.(((((((((((.((.(........).))........(((((((.......)))))))))).)))))))).)))..)))).........................---- ( -25.50)
>DroSec_CAF1 7082 116 + 1
ACAGAGGCGGUAGUCACCAAAUCAGUGUGUAUAAAAAGGCGAUAAAAGGUUUUACAAGAUUAGUAAAAUGGUGCUGGUGACAGCUAAUCUGAGUAAAUGAAGAUAAAGAUUUGAUA----
.((((...(((.(((((((.(((.((.(........).))........(((((((.......))))))))))..))))))).)))..)))).........................---- ( -25.70)
>DroSim_CAF1 7101 116 + 1
ACAGAGGCGGUAGUCACCAAAUCAGUGGGUAUAAAAAGGCGAUAAAAGGUUUUACAAGAUUAGUAAAAUGGUGCUGGUGACAGCUAAUCUGAGUAAAUGAAGAUAAAGAUUUGAUA----
.((((...(((.(((((((.(((.....((........))........(((((((.......))))))))))..))))))).)))..)))).........................---- ( -24.30)
>DroEre_CAF1 7092 115 + 1
ACAGAGGCGGUAGUCAGA-AAUCUGUGUGUAUAAAAAGGCGAUAAUAGGUUUUACAAGAUAAUUAAAAUGGUGCUGGUGACAACCAAUCUGAGUAAAUGGAGAUAAAGAUUUGAUA----
.(((((((....))).((-(((((((.(((........)))...)))))))))...............((((..((....)))))).)))).........................---- ( -20.60)
>DroYak_CAF1 7183 119 + 1
ACAGAGACGGUAGUCAGC-AAUCUGUAUGCAUAAAAGGGCGAUAAUAGGUUUUACAAGAUAAAUAAAAUGGUGCCGUUGACAACCAAUCUGAGUAAAUGGUGAUAAAGAUUUGAAAGCGA
.((((...(((.((((((-....((....))......((((.......((((........)))).......)))))))))).)))..))))............................. ( -22.94)
>consensus
ACAGAGGCGGUAGUCACCAAAUCAGUGUGUAUAAAAAGGCGAUAAAAGGUUUUACAAGAUUAGUAAAAUGGUGCUGGUGACAACUAAUCUGAGUAAAUGAAGAUAAAGAUUUGAUA____
.((((...(((.((((((..(((.....((........))........(((((((.......))))))))))...)))))).)))..))))............................. (-19.74 = -19.66 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:23 2006