Locus 3800

Sequence ID 2R_DroMel_CAF1
Location 12,545,408 – 12,545,521
Length 113
Max. P 0.982965
window6146

overview

Window 6

Location 12,545,408 – 12,545,521
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -33.98
Consensus MFE -30.12
Energy contribution -29.60
Covariance contribution -0.52
Combinations/Pair 1.13
Mean z-score -1.86
Structure conservation index 0.89
SVM decision value 1.93
SVM RNA-class probability 0.982965
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12545408 113 - 20766785
AGCGGAUUGCCAGCUCAAUCAUCUAUGAGAGGUAAUCAAUGCUGAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACGAUUCCCAUGUGGUAUGCUGGGUUUUAAAG
(((.(((((((..((((........)))).)))))))...)))(((....))).(((((((...((....))..)))))))..((..((((.((.....))))))..)).... ( -33.50)
>DroSec_CAF1 6863 113 - 1
AGCGGAUUGCCAGCUCAAUCAUCUAUGAGCGGUAAUCAAUGCUGAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACGAUUCCCAUGUGGUAUGCUGGGUUUUAAAG
(((.(((((((.(((((........))))))))))))...)))(((....))).(((((((...((....))..)))))))..((..((((.((.....))))))..)).... ( -37.60)
>DroSim_CAF1 6880 113 - 1
AGCGGAUUGCCAGCUCAAUCAUCUAUGAGCGGUAAUCAAUGCUGAAUAAUUUCAUGGCGGAACUGUUUCUGCUCUUCGCCAACGAUUCCCAUAUGGUAUGCUGGGUUUUAAAG
(((.(((((((.(((((........))))))))))))...)))(((....))).(((((((...((....))..)))))))..((..((((..........))))..)).... ( -33.40)
>DroEre_CAF1 6871 113 - 1
UGCAGAUUGCCAGCUCAAUCAUCUAUGGGAGGUAAUCAAUGCUAAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACGAUUCCCAUGUGGUAUGCUGGGUUUUAAAG
.........(((((...(((((..((((((((((.....))))...........(((((((...((....))..))))))).....)))))))))))..)))))......... ( -33.70)
>DroYak_CAF1 6963 112 - 1
UGCAGGUUGCCAGCUCAAUCAUCUAUGAGAGGUAAUCAAUGCUAAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACGAUUCCCAUGUGGUAUGCUGGGUUUUA-AG
.((((((((((..((((........)))).)))))))..)))............(((((((...((....))..)))))))..((..((((.((.....))))))..)).-.. ( -31.70)
>consensus
AGCGGAUUGCCAGCUCAAUCAUCUAUGAGAGGUAAUCAAUGCUGAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACGAUUCCCAUGUGGUAUGCUGGGUUUUAAAG
.((((((((((..((((........)))).)))))))..)))............(((((((...((....))..)))))))..((..((((.((.....))))))..)).... (-30.12 = -29.60 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:22 2006