Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,361,991 – 2,362,111 |
Length | 120 |
Max. P | 0.749448 |
Location | 2,361,991 – 2,362,111 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.57 |
Mean single sequence MFE | -34.50 |
Consensus MFE | -27.64 |
Energy contribution | -29.08 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.61 |
Structure conservation index | 0.80 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2361991 120 - 20766785 UAAUGACUGCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUCGCACAACUGACUGAGCAUAAAGUGCUUAACACAGCCAGCAGUCUAAAUCGAUAGCAUACUUAAUGGGG ....(((((.....)))))(((((((((((..(((((((..(....)....))))))).....(((((((...))))))))))))))).((.(((......))).)).........))). ( -37.80) >DroSec_CAF1 11527 120 - 1 UAAUGACUGCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUCGCACAACUGACUGAGCAUAAAGUGCUUAACACAGCCAGCAGUCUAAAUCGAUAGCAUACUUAAUGGGG ....(((((.....)))))(((((((((((..(((((((..(....)....))))))).....(((((((...))))))))))))))).((.(((......))).)).........))). ( -37.80) >DroSim_CAF1 11638 120 - 1 UAAUGACUGCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUCGCACAACUGACUGAGCAUAAAGUGCUUAACACAGCCAGCAGUCUAAAUCGAUAGCAUACUUAAUGGGG ....(((((.....)))))(((((((((((..(((((((..(....)....))))))).....(((((((...))))))))))))))).((.(((......))).)).........))). ( -37.80) >DroEre_CAF1 11406 118 - 1 UAAUGACUGCCCACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAAAUUCGCUGGCACAACUGACAGGGCACAAAGUGCUUAAC--UGCCAACGGCCUAAAUCGAUAGCAUACUUAACGGGU ........((((((((((.....)))).))...((((((((((...(((.((((((....)...((((((...))))))...--))))).)))......))))).)))))......)))) ( -29.10) >DroYak_CAF1 11017 118 - 1 UAAUGACUUCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUUGCACAACUGACAGAGCAUUAAGUGCUUAAC--GGCCAACUGUCUAAAUCGAUAGCAUACUUAAUGGGG ........((((...(((....((((((((..(((((((............)))))))...)).((((((...)))))).))--))))..(((((......)))))...)))...)))). ( -30.00) >consensus UAAUGACUGCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUCGCACAACUGACUGAGCAUAAAGUGCUUAACACAGCCAGCAGUCUAAAUCGAUAGCAUACUUAAUGGGG ....(((((.....)))))(((((((((((..(((((((............)))))))......((((((...)))))).)))))))).((.(((......))).)).........))). (-27.64 = -29.08 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:59 2006