Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,544,855 – 12,544,946 |
Length | 91 |
Max. P | 0.623228 |
Location | 12,544,855 – 12,544,946 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 89.46 |
Mean single sequence MFE | -27.98 |
Consensus MFE | -22.14 |
Energy contribution | -22.78 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.79 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12544855 91 + 20766785 ---CACUGGUGUUGUCGUCUGAUUUGUGGGCCUUAACAGGUUUUAUGCCAGCCCGUCAACGGGCUGCAGCAAGAUUUCCUCAAAAUUAGGCAGC ---.............(((((((((..((((((....))))....((((((((((....)))))))..)))......))...)))))))))... ( -30.80) >DroSec_CAF1 6323 91 + 1 ---CGCUGGUGUUGUCGUCUAACUUGUGGGCCUUAACAGGUUUUAUGCCAGCCCGCCAACGGGCUGCAGCAAGAUUUCCUCAAAAUAAGGCAGC ---.((((.(((((..(((((.....)))))..)))))((..((.((((((((((....)))))))..))).))...))...........)))) ( -29.70) >DroSim_CAF1 6340 91 + 1 ---CGCUGGUGUUGUCGUCUAAUUUGUGGGCCUUAACAGGUUUUAUGCCAGCCCGUCAACGGGCUGCAGCAAGAUUUCCUCAAAAUACGGCAGC ---.......((((((((....((((.((((((....))))....((((((((((....)))))))..)))......)).))))..)))))))) ( -32.30) >DroEre_CAF1 6329 93 + 1 UCACCAUGGUGUUGUUGUCUCAUUUGUGGGCCUUAACAGGUUUUAC-UCAGCCCGUCAACGGGCUGCAUCAAGAUUUCCUCAAAAUUAGGCAGC .(((....)))..(((((((..((((.((((((....)))).....-.(((((((....)))))))...........)).))))...))))))) ( -30.00) >DroYak_CAF1 6412 93 + 1 UCACCAUGGUGUUGUCGUCUGAUUUGUGGGCCUUAACAGGUUUUAC-UCAGCCCGUCAACUAGCUGCAUCAAGAUUUCCUCAAAAUUAGCCAGC ......((((((((.((.((((.....((((((....))))))...-))))..)).))))...((......))...............)))).. ( -17.10) >consensus ___CCCUGGUGUUGUCGUCUAAUUUGUGGGCCUUAACAGGUUUUAUGCCAGCCCGUCAACGGGCUGCAGCAAGAUUUCCUCAAAAUUAGGCAGC ..........((((((......((((.((((((....)))).......(((((((....)))))))...........)).))))....)))))) (-22.14 = -22.78 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:20 2006