Locus 3796

Sequence ID 2R_DroMel_CAF1
Location 12,541,234 – 12,541,324
Length 90
Max. P 0.957375
window6141

overview

Window 1

Location 12,541,234 – 12,541,324
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 75.89
Mean single sequence MFE -36.35
Consensus MFE -19.50
Energy contribution -18.42
Covariance contribution -1.08
Combinations/Pair 1.35
Mean z-score -2.25
Structure conservation index 0.54
SVM decision value 1.48
SVM RNA-class probability 0.957375
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12541234 90 - 20766785
UUUCGUGCGCCGCCUAGGGACGCACUUCUGGCGUCAUGAACUGGCCUCCUCCAGAAUUGGUGUCGCCCUCGCCACU-CCGCCGUUCU--UCUC
....(((((((......)).)))))....((((.......((((......))))...(((((.......)))))..-.)))).....--.... ( -27.10)
>DroPse_CAF1 2987 93 - 1
ACCCGUGCGCCCGGAAGUGGCGCACGACUGGCGUCAUGAGCUGCAUUCGUCGACAACCAGCGGCGUCUCUGCCUGGCUCGUUGCGCUAGACUC
...(((((((((....).)))))))).(((((((.((((((((((..(((((........)))))....)))..))))))).))))))).... ( -49.60)
>DroSec_CAF1 2683 90 - 1
UUUCGUGCGCCGCCAAGGGGCGCACUUCUGGCGUCAUGAACUGGUCUCCUCCAGAAUUGGUGUCGCCCCCGCCACU-UCGCUGUUCU--UCUC
....(((((((.(....))))))))....((((.(((.((((((......))))..)).))).))))...((....-..))......--.... ( -31.20)
>DroSim_CAF1 2685 90 - 1
UUUCGUGCGCCGCCAAGGGGCGCACUUCUGGCGUCAUGAACUGGUCUCCUCCAGAAUUGGUGUCGCCCCCGCCACU-UCGCUGUUCU--UCUC
....(((((((.(....))))))))....((((.(((.((((((......))))..)).))).))))...((....-..))......--.... ( -31.20)
>DroYak_CAF1 2766 90 - 1
UUUUGUGCGCCGCCAAGGGGCGCACUUCUGGCGUCAUGAGCUGGUUUCCUCCAAAAUUGGUUUCGCCGCCGCCACG-CUACUGUUCU--UCUC
....(((((((.(....))))))))...((((((..((.((.(((.....(((....)))....)))))))..)))-))).......--.... ( -29.40)
>DroPer_CAF1 2988 93 - 1
ACCCGUGCGCCCGGAAGUGGCGCACGACUGGCGUCAUGAGCUGCAUUCGUCGACAACCAGCGGCGUCUCUGCCUGGCUCGUUGCGCUAGACUC
...(((((((((....).)))))))).(((((((.((((((((((..(((((........)))))....)))..))))))).))))))).... ( -49.60)
>consensus
UUUCGUGCGCCGCCAAGGGGCGCACUUCUGGCGUCAUGAACUGGUCUCCUCCAGAAUUGGUGUCGCCCCCGCCACG_UCGCUGUUCU__UCUC
....(((((((.(....))))))))....((((......(((((............)))))........)))).................... (-19.50 = -18.42 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:16 2006