Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,531,829 – 12,531,924 |
Length | 95 |
Max. P | 0.542517 |
Location | 12,531,829 – 12,531,924 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -23.55 |
Consensus MFE | -14.98 |
Energy contribution | -15.90 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.23 |
Mean z-score | -1.76 |
Structure conservation index | 0.64 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12531829 95 + 20766785 -------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAUGCCCGCUCGGUUUCCUCGUCCAUUUCCGCGUCGAUUUCUAGGUCGGCACCAUCCCC -------------.(((..((((((..((...))..))))))..)))....((((.(((..(..((..(((........)))..))...)..))).))))........ ( -25.50) >DroVir_CAF1 11182 105 + 1 UUUCUUGUUUGCCUGCGA---UUGUUUUCCUUGUUUACAGAAGUCCUUGUAAGCACGCUCAGUCUCUUCGUCCAUUUCCGGGUCGAGAUCCAAAUCGUUAUCUCUUAC ..............((((---((........(((((((((......)))))))))......(..((((..(((......)))..))))..).)))))).......... ( -19.30) >DroSec_CAF1 8693 95 + 1 -------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAUGCCCGCUCGGUCUCCUCGUCCAUCUCUGCGUCCAUUUCCAGGUCGGCACCAUCCCC -------------.(((..((((((..((...))..))))))..)))....((((.((..((......(((........))).......))..)).))))........ ( -23.82) >DroSim_CAF1 8866 95 + 1 -------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAUGCCCGCUCGGUUUCCUCGUCCAUCUCUGCGUCCAUUUCCAGGUCGGCACCAUCCCC -------------.(((..((((((..((...))..))))))..)))....((((.((..((......(((........))).......))..)).))))........ ( -23.82) >DroEre_CAF1 8979 95 + 1 -------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAGGCCCGCUCGGUUUCCUCGUCCAUCUCGGCGUCCAUUUCCAAGUCGGCAGCAUCCCC -------------.(((..((((((..((...))..))))))..)))(((..(((.(((.((......((((......)))).......)).))).))).)))..... ( -26.42) >DroYak_CAF1 8820 95 + 1 -------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAGGCCCGCUCGGUUUCCUCGUCCAUCUCGGCAUCCAUUUCCAGGUCGGCACCAUCCCC -------------.(((..((((((..((...))..))))))..))).....(((.((..((.........((.....)).........))..)).)))......... ( -22.47) >consensus _____________UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAUGCCCGCUCGGUUUCCUCGUCCAUCUCCGCGUCCAUUUCCAGGUCGGCACCAUCCCC ..............(((..((((((..((...))..))))))..))).....(((.(((.((......(((........))).......)).))).)))......... (-14.98 = -15.90 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:15 2006