Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,530,636 – 12,530,737 |
Length | 101 |
Max. P | 0.999322 |
Location | 12,530,636 – 12,530,737 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 97.21 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -25.70 |
Energy contribution | -25.54 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.04 |
Structure conservation index | 1.01 |
SVM decision value | 3.51 |
SVM RNA-class probability | 0.999322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12530636 101 - 20766785 UCAAUCUGCUCGCGACAGUAAAAAAAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAAAAGCUAAACGGCAGCGAGUG .......((((((...............(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.30) >DroSec_CAF1 7474 99 - 1 UCAAUCUGCUCGCGACAGUAAA--AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAACAACUAAACGGCAGCGAGUG .......((((((.........--....(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.60) >DroSim_CAF1 7636 99 - 1 UCAAUCUGCUCGCGACAGUAAA--AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAGAAACUAAACGGCAGCGAGUG .......((((((.........--....(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.60) >DroEre_CAF1 7738 100 - 1 UCAUUCUGCUCGCGACAGUAAAA-AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAAAAACUAAACGGCAGCGAGUG .......((((((..........-....(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.60) >DroYak_CAF1 7597 100 - 1 UCAUUCUGCUCGCGACAGUAAAA-AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAAAAACUAAACGGCAGCGAGUG .......((((((..........-....(((.(((((........))))).)))............(((((...((.......))...))))).)))))). ( -25.60) >consensus UCAAUCUGCUCGCGACAGUAAAA_AAAAUCGGAUCGAAGUGUAAAUCGGUGUGAAUUAAAUUAUUCGCUGUGAUGUGAUAAAAACUAAACGGCAGCGAGUG .......((((((...............(((.(((((........))))).)))............(((((...((.......))...))))).)))))). (-25.70 = -25.54 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:14 2006