Locus 3793

Sequence ID 2R_DroMel_CAF1
Location 12,529,079 – 12,529,187
Length 108
Max. P 0.830056
window6138

overview

Window 8

Location 12,529,079 – 12,529,187
Length 108
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 75.50
Mean single sequence MFE -19.06
Consensus MFE -2.76
Energy contribution -3.56
Covariance contribution 0.80
Combinations/Pair 1.20
Mean z-score -1.75
Structure conservation index 0.14
SVM decision value 0.71
SVM RNA-class probability 0.830056
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12529079 108 - 20766785
AUUGAUGAGGCUAUUGGCUAC--UGAAUUCCA----UGACUACGAAU-UUAUAAUAUAGUCGUACUCCAUUUGCUAUCUAUAUCUUUGUAUUUGCAAAUGACCCCAACUUUUCCU
.......(((...((((....--........(----((((((.....-........)))))))....(((((((....((((....))))...)))))))...)))).....))) ( -16.72)
>DroSec_CAF1 5836 108 - 1
AUUGAAGAGGCUUUUGGCUAC--UGAAUUCCA----UCACUGUGAAU-UUAUAAUAUACUUGUACUCCAUUUGCUUUCCAUAUCUUUGUAUUUGCAAAUGACCCCAACUUUUCCU
...((((((....((((....--(((((((((----....)).))))-)))................(((((((....((......)).....)))))))...)))))))))).. ( -18.00)
>DroSim_CAF1 5989 108 - 1
AUUGAAGAGGCUUUUGGCUAC--UGAAUUCCA----UCACUGUGAAU-UUAUAAUAUACUUGUACUCCAUUUGCUUUCCAUAUCUUUGUAUUUGCAAAUGACCCCAACUUUUCCU
...((((((....((((....--(((((((((----....)).))))-)))................(((((((....((......)).....)))))))...)))))))))).. ( -18.00)
>DroEre_CAF1 6151 110 - 1
-----UGGGGGUUUUGCCGAAUAAAUUAUCAAAUACUGAAUGGGAAUGUUUUAAUAUACAUGUACUCCAUUCACAUUCCAUAUCUUUAUAUUUACAAAUGACCCCAACUUUUCCU
-----(((((..((((..(((((.............((((((((.((((........))))....))))))))...............))))).))))...)))))......... ( -21.49)
>DroYak_CAF1 5978 91 - 1
-----AGGGGCUAC---------AGUGCUCCA----UGAAUGGGAAUGCUUUAAUAUACUUGUACUCCAUUCAUAUUCCAUAUCUUUGUAUUUACAACUGACCCCAACU------
-----.((((...(---------(((.....(----((((((((..(((............))).)))))))))............(((....))))))).))))....------ ( -21.10)
>consensus
AUUGAAGAGGCUUUUGGCUAC__UGAAUUCCA____UGACUGGGAAU_UUAUAAUAUACUUGUACUCCAUUUGCUUUCCAUAUCUUUGUAUUUGCAAAUGACCCCAACUUUUCCU
...................................................................(((((((.....(((....)))....)))))))............... ( -2.76 =  -3.56 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:13 2006