Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,527,937 – 12,528,056 |
Length | 119 |
Max. P | 0.998447 |
Location | 12,527,937 – 12,528,056 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 92.44 |
Mean single sequence MFE | -29.28 |
Consensus MFE | -25.74 |
Energy contribution | -25.94 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.16 |
Mean z-score | -2.30 |
Structure conservation index | 0.88 |
SVM decision value | 3.10 |
SVM RNA-class probability | 0.998447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12527937 119 - 20766785 GUAUCUAUUAUGUAUAUUGAGUGCUAAACAUAAGAAGCAGGGAUUUUAAAUAUUGUAAAGCUCUGUUUUCGUUAUGUAAGGCACUUUGGUUAAGUAUGUUAUAUACCCUGUAAAUGUUU ((((.((.((((..((..(((((((..(((((((((((((((.(((((.......))))))))))))))..))))))..)))))))....))..)))).)).))))............. ( -27.50) >DroSec_CAF1 4694 119 - 1 GUAUCAAUUAUGUAUAUUGAGUGCUAGACAUAAGGAGCCGGGAUUUAAAGUAUUUUAAAGCUCUGUUUCCGUUAUGUAAGGCACUUUGGUUAAGUAUGUUAUAUACCCUGUAAAUGUUU ((((....((((..((..(((((((..((((((((((.((((.((((((....))))))..)))).)))).))))))..)))))))....))..))))....))))............. ( -27.10) >DroSim_CAF1 4847 119 - 1 GUAUCUAUUAUGUAUAUUGAGUGCUAGACAUAAGGAGCAGGGAUUUAAAGUAUUUUAAAGCUCUGUUUCCGUUAUGUAAGGCACUUUGGUUAAGUAUGUUAUAUACCCUGUAAAUGUUU ((((.((.((((..((..(((((((..(((((((((((((((.((((((....)))))).))))).)))).))))))..)))))))....))..)))).)).))))............. ( -31.60) >DroEre_CAF1 4986 119 - 1 GUAUCUAUUAUGUAUAUUGAGUGCUGAACAUAAGGAACAGGGAGUUAAAGUAUUUUGAAGCUCUGUCUCCGUUAUGUAAGGUACUUUGGUUAAGUAUGUUAUAUACCUUGUAAAUGUUU ((((.((.((((..((..(((((((..(((((((((((((((..(((((....)))))..)))))).))).))))))..)))))))....))..)))).)).))))............. ( -30.40) >DroYak_CAF1 4843 119 - 1 GUAUCUAUUAUGUAUAUUGAGUGCUGAACAUAGGGAACAGGGAGUUUAAGUAUUUUAAAGCUCUGUUUUCUUUUUGUAAGGUACUUUGGUUAAGUAUGUGAUAUACCCUGUAAAUGUUU (((((...(((..((...(((((((..(((.((..(((((((..((((((...)))))).)))))))..))...)))..)))))))..))...)))...)))))............... ( -29.80) >consensus GUAUCUAUUAUGUAUAUUGAGUGCUAAACAUAAGGAGCAGGGAUUUAAAGUAUUUUAAAGCUCUGUUUCCGUUAUGUAAGGCACUUUGGUUAAGUAUGUUAUAUACCCUGUAAAUGUUU ((((....((((..((..(((((((..(((((((((((((((.((((((....)))))).)))))).))).))))))..)))))))....))..))))....))))............. (-25.74 = -25.94 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:13 2006