Locus 3791

Sequence ID 2R_DroMel_CAF1
Location 12,527,130 – 12,527,241
Length 111
Max. P 0.615611
window6136

overview

Window 6

Location 12,527,130 – 12,527,241
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 75.32
Mean single sequence MFE -33.57
Consensus MFE -22.32
Energy contribution -23.83
Covariance contribution 1.50
Combinations/Pair 1.30
Mean z-score -1.13
Structure conservation index 0.66
SVM decision value 0.17
SVM RNA-class probability 0.615611
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12527130 111 + 20766785
UGGCACUCGGAACCACCACGGAUGAGGCAUCCUUACUGGAUUGGCUUUCUUCUUUGGGCUUUUCCUUAGUGGUGCUGUUGUCGCCGAUAGUCUUGGUGGUAUCCUCCUUCA
........((((((((((.((((..((((((((....(((..(((((........)))))..)))..)).))))))((((....)))).))))))))))).)))....... ( -36.50)
>DroGri_CAF1 5395 87 + 1
UAGUGAUGGAUACUACAGC------CAAGUCCUCUA-------GUGG-UUUGAUCUGCUCCUCGACAAACUGGGCUAAUUCAGAUG----UCUUGGUGGUUGUG------G
............(((((((------((........(-------(..(-......)..))((..((((..(((((....))))).))----))..))))))))))------) ( -22.40)
>DroSec_CAF1 3857 111 + 1
UGGCACUCGGAACCACCACGGAUGAGGCAUCCUUACUGGACUGGCUUUCUUCUUUGGGCUUUUCCUUUGUGGUGCUGUUGUCGCCGAUAGUCUUGGUGGUAUCCUCCUUCA
........((((((((((.((((..((((((..((..(((..(((((........)))))..)))..)).))))))((((....)))).))))))))))).)))....... ( -34.40)
>DroSim_CAF1 4009 111 + 1
UGGCACUCGGAACCACCACGGAUGAGGCAUCCUUACUGGACUGGCUUUCUUCUUUGGGCUUUUCCUUAGUGGUGCUGUUGUCGCCGAUAGUCUUGGUGGUAUCCUCCUUCA
........((((((((((.((((..((((((((....(((..(((((........)))))..)))..)).))))))((((....)))).))))))))))).)))....... ( -35.70)
>DroEre_CAF1 4143 111 + 1
UGGCACUCGGAACCACCACGGAUGAGGCAUCCUUACUGGACUGGCUUUCUUCUUUGGGCUUUUCCUUAGUGGUGCUGUUGUCGCCGAUGGUCUUGGUGGUAUCCUCUUUGA
........((((((((((.((((..((((((((....(((..(((((........)))))..)))..)).))))))((((....)))).))))))))))).)))....... ( -35.80)
>DroYak_CAF1 4001 111 + 1
UGGCACUCGGUACCACCACGGAUGAGGCAUCCUUGCUGGACUGGCUAUCUUCUUUGGGCUUUUCCUUAGUGGUGCUGUUGUCGCCGAUAGUCUUGGUGGUAUCCUCACUGA
........((((((((((.(((((...)))))..........(((((((..((..(((....)))..)).(((((....).))))))))))).))))))))))........ ( -36.60)
>consensus
UGGCACUCGGAACCACCACGGAUGAGGCAUCCUUACUGGACUGGCUUUCUUCUUUGGGCUUUUCCUUAGUGGUGCUGUUGUCGCCGAUAGUCUUGGUGGUAUCCUCCUUCA
........(((((((((((((....((((((.(((..(((..(((((........)))))..))).))).)))))).......))).......))))))).)))....... (-22.32 = -23.83 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:11 2006