Locus 379

Sequence ID 2R_DroMel_CAF1
Location 2,361,108 – 2,361,225
Length 117
Max. P 0.993223
window746

overview

Window 6

Location 2,361,108 – 2,361,225
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.79
Mean single sequence MFE -50.50
Consensus MFE -24.87
Energy contribution -27.47
Covariance contribution 2.60
Combinations/Pair 1.07
Mean z-score -2.62
Structure conservation index 0.49
SVM decision value 2.38
SVM RNA-class probability 0.993223
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2361108 117 + 20766785
UUAACAGCCCGCCG-GUUGCACCUGCAGCCAUGCGAAGGGGUGUCCUGGCC--AGCAGGAAGGGGGCAGCCAGACAAAGGACCUCCCCCUUCUUGGCCAGCCGAGUCGAGCUCCGCAACU
...(((.(((((.(-(((((....))))))..))...))).)))..(((((--(...(((((((((..(((.......)).)..)))))))))))))))((.(((.....))).)).... ( -52.40)
>DroSec_CAF1 10562 119 + 1
UUAACACCCCGCCG-GUUGCACCUGCAGCCAUGCGAAGGGGUGUCCUGGCCGAAGCAGGAAGGGGGCAGCCAGACAAAGGACCUCCCCCUUCUUGGCCAGCCGAGUCGAGCUCCGCAACU
...(((((((((.(-(((((....))))))..))...)))))))..((((((.....(((((((((..(((.......)).)..)))))))))))))))((.(((.....))).)).... ( -55.40)
>DroSim_CAF1 10676 119 + 1
UUAACACCCCGCCG-GUUGCACCUGCAGCCAUGCGAACGGGUGUCCUGGCCGAAGCAGGAAGGGGGCAGCCAGACAAAGGACCUCCCCCUUCUUGGCCAGCCGAGUCGAGCUCCGCAACU
...(((((((((.(-(((((....))))))..)))...))))))..((((((.....(((((((((..(((.......)).)..)))))))))))))))((.(((.....))).)).... ( -54.50)
>DroEre_CAF1 10646 102 + 1
UUAACACCCCGCCGUGCUGCACCUGCAGCCGUGGGCCGGGGUGUCCUGGCC--AGCGGGAGGGGCGAGGCCAGACAAAGGACCUCU--------------CCU--UCGAGCCUCGCAACU
.......(((((((.(((((....)))))))..(((((((....)))))))--.)))))((..(((((((..((...((((....)--------------)))--))..)))))))..)) ( -55.30)
>DroYak_CAF1 10135 93 + 1
GAAACACCCCGCCGUGUUGCACCUGCAGCCGUACGAAGGGGUGUCCUG-------------------------ACAAAGGACCUCUUUCUUCUUGGCCGGCCU--GCGAGCCUCGCAAUU
.......((.((((.(((((....))))))....(((((((.(((((.-------------------------....)))))))))))).....))).))..(--(((.....))))... ( -34.90)
>consensus
UUAACACCCCGCCG_GUUGCACCUGCAGCCAUGCGAAGGGGUGUCCUGGCC__AGCAGGAAGGGGGCAGCCAGACAAAGGACCUCCCCCUUCUUGGCCAGCCGAGUCGAGCUCCGCAACU
...(((((((..((.(((((....)))))....))..))))))).(((((..................))))).....(((.(((......(((((....)))))..))).)))...... (-24.87 = -27.47 +   2.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:58 2006