Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,524,370 – 12,524,475 |
Length | 105 |
Max. P | 0.699134 |
Location | 12,524,370 – 12,524,475 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -47.28 |
Consensus MFE | -32.44 |
Energy contribution | -33.83 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.17 |
Mean z-score | -1.43 |
Structure conservation index | 0.69 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12524370 105 - 20766785 GUGGCGGCCAACGGUCGUGCGGCCUCGUUGCGGCGGCAGCAGGAUCGUCAUAGGCGACGCCGUCAGAGGCGGGAGCGGCGCUCCCAUUUAUGUCACACUCCCAAU (((((((((.((((((.(((.((((((...))).))).))).))))))....((((....))))...)))((((((...)))))).....))))))......... ( -47.20) >DroPse_CAF1 1008 99 - 1 AUGGUAGCCACAGGACAUGUGGCCUCCAUUCGGCGGCAGCAGGAUCGCCACAAGCGGCGCCACCAUC------AACGGCGCUCCCGCCGGCCCCACUCUCGCACC ((((..((((((.....))))))..))))(((((((.(((......(((......)))(((......------...)))))).)))))))............... ( -41.80) >DroSim_CAF1 1195 105 - 1 CUGGCGGCCAACGGUCGUGCGGCCUCGUUGCGGCGGCAGCAGGAUCGUCAUAGGCGACGCCGUCAGCGGCGGGAGCGGCGCUCCCAUUUAUGUCACUCUCCCAGU ((((.((((.((((((.(((.((((((...))).))).))).))))))....)))(((((((....))))((((((...))))))......))).....))))). ( -50.20) >DroEre_CAF1 1342 105 - 1 CUGGCGGCCACCGGUCGUGCGGCCUCCUUGCGGCGGCAGCAGGAUCGCCACAGGCGACGCCGUCAGCGGCGGGAGCGGCGCUCCCAUUUAUGUCACAGUCCCAGU ((((.(((....((((.(((.(((.((....)).))).))).))))(((...)))(((((((....))))((((((...))))))......)))...))))))). ( -52.00) >DroYak_CAF1 1215 105 - 1 CUGGCGGCCACCGGUCGUGCGGCCUCCUUGCGGCGGCAGCAGGAUCGCCAUAGGCGACGCCGUCAGCGGCGGGAGCGGCGCUCCCAUUUAUGUCACAGUCCCAGU ((((.(((....((((.(((.(((.((....)).))).))).))))(((...)))(((((((....))))((((((...))))))......)))...))))))). ( -52.00) >DroPer_CAF1 1008 99 - 1 AUGGUAGCCACAGGACAUGUGGCCUCCAUUCGGCGGCAGCAGGAUCGCCACAAGCGGCGCCACCAUC------AACGGCGCUCCCGCAGGCCCCACUCUCGCACC ((((..((((((.....))))))..))))..((.(((.((.(((.(((.....)))(((((......------...)))))))).))..)))))........... ( -40.50) >consensus CUGGCGGCCACCGGUCGUGCGGCCUCCUUGCGGCGGCAGCAGGAUCGCCACAGGCGACGCCGUCAGCGGCGGGAGCGGCGCUCCCAUUUAUGUCACACUCCCAGU ((((((((....((((.(((.(((.((....)).))).))).))))(((......)))))))))))....((((((...)))))).................... (-32.44 = -33.83 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:09 2006