Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,516,873 – 12,516,976 |
Length | 103 |
Max. P | 0.767528 |
Location | 12,516,873 – 12,516,976 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 96.12 |
Mean single sequence MFE | -20.11 |
Consensus MFE | -16.74 |
Energy contribution | -16.94 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.83 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12516873 103 - 20766785 CCAAAGAGUCGCCUGGCUUAUUAGUCUUUAAUAUUUGAGCUAUCCGUCCGGAUUUGCUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU .(((((((.((...((((....)))).......(((((((.((((....))))..))).))))..)).)))((((((((.....))))))))..))))..... ( -21.40) >DroSec_CAF1 51273 103 - 1 CCAAAGAGUCGCCUGGCUUAUUUGUCUUUAAUAUUUGAGAUAUCCGUCCGGAUUUGCUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU ....((((((....(((.....((((((........))))))........(((((......))))))))..((((((((.....)))))))).....)))))) ( -19.30) >DroSim_CAF1 45940 103 - 1 CCAAAGAGUCGCCUGGCUUAUUUGUCUUUAAUAUUUGAGAUAUCCGUCCGGAUUUGCUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU ....((((((....(((.....((((((........))))))........(((((......))))))))..((((((((.....)))))))).....)))))) ( -19.30) >DroEre_CAF1 46111 103 - 1 CCAAAGAGUCGCCUGGCUUAUUAGUCUUAAAUAUUUGAGCUAUCCGUCCGGAUUUACUAUAAAACCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU .(((((((.((..(((((((...............)))))))(((....))).............)).)))((((((((.....))))))))..))))..... ( -19.26) >DroYak_CAF1 46887 103 - 1 CCAACGAGUCGCCUGGCUUAUUAGUCUUAAAUAUUUGAGCUAUCCGCCCGGAUUUACUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU .....(((((.((.(((....(((.(((((....))))))))...))).))....................((((((((.....)))))))).....))))). ( -21.30) >consensus CCAAAGAGUCGCCUGGCUUAUUAGUCUUUAAUAUUUGAGCUAUCCGUCCGGAUUUGCUGUAAAAUCGUCUCAAGAAUAACAUCUUUAUUCUUAUUUUGAUUCU .(((((((.((...(((......))).......((((((..((((....))))...)).))))..)).)))((((((((.....))))))))..))))..... (-16.74 = -16.94 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:05 2006