Locus 3783

Sequence ID 2R_DroMel_CAF1
Location 12,510,551 – 12,510,641
Length 90
Max. P 0.626016
window6126

overview

Window 6

Location 12,510,551 – 12,510,641
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -20.25
Consensus MFE -17.74
Energy contribution -18.18
Covariance contribution 0.44
Combinations/Pair 1.19
Mean z-score -1.23
Structure conservation index 0.88
SVM decision value 0.19
SVM RNA-class probability 0.626016
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12510551 90 - 20766785
UUCAUUUUUAAAGGCGAUGGAAUUGAUCUAUUUCAUGACUAUGGCUCUAAAAGUGAAUCUUUGGGCAAAGAGCGUUUCAGGAUUGGAACA
((((((((((..(((.((((...(((......)))...)))).))).))))))))))(((((....)))))..(((((......))))). ( -23.40)
>DroSec_CAF1 44917 90 - 1
UUCAUUUUCAAAGGCGAUGGAAUUGAUCUAUUUCAUAAUUAUGGCUCUAAAAGUGAAUCCUUGGGCAAAGAGCGUUUCAGGAUUGGAACA
.(((((((....(((.((((...(((......)))...)))).)))...)))))))(((((..(((.......)))..)))))....... ( -17.70)
>DroSim_CAF1 40625 90 - 1
UUCAUUUUUAAAGGCGAUGGAAUUGAUAUAUUUCAUAACUAUGGCUCUAAAAGUGAAUCCUUGGGCAAAGAGCGUUUCAGGAUUGGAACA
.(((((((((..(((.((((...(((......)))...)))).))).)))))))))(((((..(((.......)))..)))))....... ( -22.50)
>DroEre_CAF1 39756 90 - 1
UUCAUUUUUAAAGGCGAUGGAAUCGAUAUAUUUCAUAACCUUGGCUCUAAAAAUGAAUCCUUGGGUAAAGACCGUUUCAGGAUUGGAACA
((((((((((((((..(((((((......)))))))..)))).....))))))))))......(((....)))(((((......))))). ( -21.10)
>DroYak_CAF1 40647 90 - 1
UUCAAUUUUAAAGGCUUCGGAUUUGAUCUAUUUCAUAACUAUGGCUCUAAAAGUGAAUCCUUGGGCAAAGAGCGUUUCAGGAUUGGAACA
((((((((((((.((((.((...(((......)))...))...((((...............))))...)))).))).)))))))))... ( -16.56)
>consensus
UUCAUUUUUAAAGGCGAUGGAAUUGAUCUAUUUCAUAACUAUGGCUCUAAAAGUGAAUCCUUGGGCAAAGAGCGUUUCAGGAUUGGAACA
.(((((((((..(((.((((...(((......)))...)))).))).)))))))))(((((..(((.......)))..)))))....... (-17.74 = -18.18 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:01 2006