Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,510,108 – 12,510,206 |
Length | 98 |
Max. P | 0.688346 |
Location | 12,510,108 – 12,510,206 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.17 |
Mean single sequence MFE | -36.50 |
Consensus MFE | -17.42 |
Energy contribution | -17.62 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.31 |
Mean z-score | -2.45 |
Structure conservation index | 0.48 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12510108 98 - 20766785 -UCCAGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUGCAUUUGCAUUUGCAUUCACCUGCAUUAGUGGCGUCCA---CCCUC-GGGCUGAUGUAAGUG -....(((((.(((((((((...((((-----(((((((((((........)))))))))...)))))).....)))))((((.---.....-)))).))))))))). ( -38.10) >DroSec_CAF1 44517 98 - 1 -UCCAGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUGCAUUUGCAUUUGCAUUCACCUGCAUUAGUGGCGUCCA---CCCUC-GGGCUAAUGUAAGUG -....(((((.(((((((((...((((-----(((((((((((........)))))))))...)))))).....)))))((((.---.....-)))).))))))))). ( -37.70) >DroSim_CAF1 40192 93 - 1 CUCCAGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUGC------AUUUGCAUUCACCUGCAUUAGUGGCGUCCA---CCCUC-GGGCUGAUGUAAGUG .....(((((.(((((((((...((((-----((((((((((....))------))))))...)))))).....)))))((((.---.....-)))).))))))))). ( -36.70) >DroEre_CAF1 39329 92 - 1 -UACAGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUAC------AUUCGCAUUCACCUGCAGUAGUGGCAUCCU---CCGUG-GGGCUGAUGCAAGUG -..((((((.((..((((((...((((-----(((((((((......)------))))))...)))))).....))))))....---..)).-))))))......... ( -34.40) >DroYak_CAF1 40222 92 - 1 -UCCGGCUUGACAUUGUCACGUUCAGG-----UGGCGGAUGCAUUUUC------AUUUGCAUUCACCUGCAUUGGUGGCAAUCA---CCCUC-GGGCUGAUGCAAGUG -..((((((((.((((((((((.((((-----((...((((((.....------...)))))))))))).))..))))))))..---...))-))))))......... ( -32.30) >DroAna_CAF1 38840 102 - 1 CCGUAGCCUGACACUGUCGUGUCCUGGGGCGGCGGCGGCGGGAGAUGC------AUUAGCUUUUACCUGUAUUAGGUGCGUCCACCACCCUCAGGGCUGUGGCAAGUG ((((((((.(((((....)))))((((((.((.((((((((((((.((------....)).))).)))))........)).)).)).))).)))))))))))...... ( -39.80) >consensus _UCCAGCUUGACAUUGUCACGUUCAGG_____UGGCGGAUGCAUUUGC______AUUUGCAUUCACCUGCAUUAGUGGCGUCCA___CCCUC_GGGCUGAUGCAAGUG ....(((.((((...)))).)))..........((.(((((((..............))))))).))(((((((((((...))....((....))))))))))).... (-17.42 = -17.62 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:00 2006