| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,505,020 – 12,505,115 |
| Length | 95 |
| Max. P | 0.847349 |
| Location | 12,505,020 – 12,505,115 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 90.10 |
| Mean single sequence MFE | -26.26 |
| Consensus MFE | -23.88 |
| Energy contribution | -24.18 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12505020 95 + 20766785 --------AUCGUAAGUCGGCCGUUAUGAAGUGCCAUAAAAAAGGCUGGAAGCUGCGGCUUCUGGCAGCCAUAAAAUAGGCAUUUCCAGCACAUUUACCCAAG --------...((((((..((.(....((((((((........((((((((((....)))))...)))))........))))))))).))..))))))..... ( -28.69) >DroSec_CAF1 39540 94 + 1 --------AUCGUAAGUCGGCCGUUAUGAAGUGCCAUAAA-AAGGUUGGAAGCUGAGGCUUCUGGCAGCCAUAAAAUAGGCAUUUCCAGCACAUUUUCCCAAG --------.((((((........)))))).((((......-...((..(((((....)))))..)).(((........))).......))))........... ( -25.80) >DroSim_CAF1 35211 95 + 1 --------AUCGUAAGUCGCCCGUUAUGAAGUGCCAUAAAAAAGGUUGGAAGCUGCGGCUUCUGGCAGCCAUAAAAUAGGCAUUUCCAGCACAUUUACCCAAG --------.((((((........)))))).((((..........((..(((((....)))))..)).(((........))).......))))........... ( -25.80) >DroEre_CAF1 34328 95 + 1 --------AUCGUAAGUCGGCCGUUAUGAAGUGCCAUAAAAAAGGCUGGAAGCCGCAGCUUCUGGCAGCCAUAAAAUAGGCAUUUCCAGCACAUUUACCCCAG --------...((((((.((((........).))).........(((((((((((.......)))).(((........)))..)))))))..))))))..... ( -28.20) >DroYak_CAF1 35101 103 + 1 AUCCUACCAUCGUAAGUCGGCCGUUAUGAAGUGCCAUAAAAAAGGCUGGAAGCCGCGGCUUCUGGCAGCCAUAAAAUAGGUAUUUCCAGCACAUUUACCCAAG ......((..(....)..))..(((..((((((((........((((((((((....)))))...)))))........)))))))).)))............. ( -27.79) >DroAna_CAF1 33871 93 + 1 --------AUCGUAAGUCGGCCGUUAUGAAGUGCCAUAAAAA--GCAGGCAGAGGAAAGCUCAGGCAGCCAUAAAAUAGGCAUUUCCAGCACAUUUACCCAAG --------...(((((((.((..(((((......)))))...--)).)))...(((((((....)).(((........))).))))).......))))..... ( -21.30) >consensus ________AUCGUAAGUCGGCCGUUAUGAAGUGCCAUAAAAAAGGCUGGAAGCUGCGGCUUCUGGCAGCCAUAAAAUAGGCAUUUCCAGCACAUUUACCCAAG .........((((((........)))))).((((..........((..(((((....)))))..)).(((........))).......))))........... (-23.88 = -24.18 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:58 2006