Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,490,202 – 12,490,296 |
Length | 94 |
Max. P | 0.904910 |
Location | 12,490,202 – 12,490,296 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 91.04 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -18.04 |
Energy contribution | -18.22 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -2.41 |
Structure conservation index | 0.79 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12490202 94 + 20766785 UUAUGAGCCAAUUUGAUGAUAAAUCAAAAUGAGCCUUGUGA-GAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUAAAAGGGAGCUGUCAAAAA ...(((((((.((((((.....)))))).)).))..(((..-..)))...((..(((((((((((......)))))))))))..))..))).... ( -26.00) >DroSec_CAF1 24805 95 + 1 UUAUGCACAAAUUCGAUGAUAAAUCAAAAUGAACCUUGUGAAGAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUAAAAGGGAGCUGUCAAAAA ...((((((.....(((.....)))...........(((.....))))))))).(((((((((((......)))))))))))............. ( -22.10) >DroSim_CAF1 19733 95 + 1 UUAUGCACAAAUUCGAUGAUAAAUCAAAAUGAACCUUGUGAAGAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUAAAAGGGAGCUGUCAAAAA ...((((((.....(((.....)))...........(((.....))))))))).(((((((((((......)))))))))))............. ( -22.10) >DroYak_CAF1 20301 93 + 1 GAAUGAAAAAAUAUGAUUAGAAAUCAAAAUGGACCUUGCGA-GAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUA-AGGGGAGCUGUCAAAAA .............((((.((.........((.((..(((..-..))).)).)).(((((((((((......))))))-)))))..)))))).... ( -21.70) >consensus UUAUGAACAAAUUCGAUGAUAAAUCAAAAUGAACCUUGUGA_GAGCAUGUGCAACCUUUUAUGUUUUGUGCAGCAUAAAAGGGAGCUGUCAAAAA ................(((((..((....((.((..(((.....))).)).)).(((((((((((......)))))))))))))..))))).... (-18.04 = -18.22 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:53 2006