Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,486,553 – 12,486,658 |
Length | 105 |
Max. P | 0.600770 |
Location | 12,486,553 – 12,486,658 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.38 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -22.12 |
Energy contribution | -20.56 |
Covariance contribution | -1.56 |
Combinations/Pair | 1.29 |
Mean z-score | -1.19 |
Structure conservation index | 0.89 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12486553 105 - 20766785 UAGAAGGAAAAUUGGGAAGUUUUUAUUUCGGGAACACUUCUUUGAUUGCGAUGAAAAACUUUUUAUGCAGGCACAAUACAAUCCCCGGCCAAUAUUCUUUCAGUA ..(((((((.((((((((((....)))))((((.........((.((((.((((((....)))))))))).))........))))...))))).))))))).... ( -26.43) >DroSec_CAF1 21242 105 - 1 UAGAAGGAAAAUCGGGAAGUUUUUAUUUCGGGAAUGCUUCUUUGAUUGCGAUGAAAAACUUUUUAUGCAGGCACAAUACAAUCCCCGGACAAUAUUCUUUCAGUA ..(((((((......(((((....)))))((((.((......((.((((.((((((....)))))))))).)).....)).)))).........))))))).... ( -21.40) >DroSim_CAF1 16127 105 - 1 UAGAAGGAAAAUCGGGAAGUUUUUAUUUCGGGAAUGCUUCUUUGAUUGCGAUGAAAAACUUUUUAUGCAGGCACAAUACAAUCCCCGGCCAAUAUUCUUUCAGUA ..(((((((.((.(((((((....)))))((((.((......((.((((.((((((....)))))))))).)).....)).))))...)).)).))))))).... ( -23.90) >DroEre_CAF1 16198 105 - 1 UAGGAGGAAAUUCGGAAAGUUUUUAUUUCGGGAACACUGCUUUGAUUGCGAUGAGGAACUUUUUAUGCUGGCGCAAUACAAUCCCCUGCCAAUAUUCUUUCAGUA ..(((((((....(((((((((((...(((.((.((......)).)).)))..)))))))))))....(((((.............)))))...))))))).... ( -23.42) >DroYak_CAF1 16563 105 - 1 UAGGAGGGAAUUCGGAAAGUUUUUAUUUCGGGAACACUUCUUUGAUUGCGAUGAGGAACUUUUUAUGCAGGCACAAUACAAUCCCCUGCCAGUAUUCCUUCAGUA ...((((((((.((((((((((((...(((.((.((......)).)).)))..)))))))))))..(((((.............)))))..).)))))))).... ( -29.02) >consensus UAGAAGGAAAAUCGGGAAGUUUUUAUUUCGGGAACACUUCUUUGAUUGCGAUGAAAAACUUUUUAUGCAGGCACAAUACAAUCCCCGGCCAAUAUUCUUUCAGUA ..(((((((....(((((((((((...(((.((.((......)).)).)))..))))))))))).....(((...............)))....))))))).... (-22.12 = -20.56 + -1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:52 2006