Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,482,497 – 12,482,595 |
Length | 98 |
Max. P | 0.876202 |
Location | 12,482,497 – 12,482,595 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.34 |
Mean single sequence MFE | -18.96 |
Consensus MFE | -16.80 |
Energy contribution | -17.00 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.43 |
Structure conservation index | 0.89 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12482497 98 - 20766785 CAGGUCUUAAUAAAUAAUACAUUAAAUAUAAG-UUAUAUCUUUUCUGAGAGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUACCCGGGUUCCGGUCA .((((.((((((((..((((............-.....((((....))))(((((....)))))))))))))))))...))))..((((...))))... ( -15.10) >DroSec_CAF1 17106 99 - 1 CAGGUCUUAAUAAAUAAGACAUUAAAUAUGACUUUAUAUCUUUUCUGAGAGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUACCCGGGUUCCGGUCA ...((((((.....))))))...((((((((.(((((((((((....)))).)))))))...))))))))...............((((...))))... ( -18.70) >DroSim_CAF1 12042 99 - 1 CAGGUCUUAAUAAAUAAGACAUUAAAUAUGACUUUAUAUCUUUUCUGAGAGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUACCCGGGUUCCGGUCA ...((((((.....))))))...((((((((.(((((((((((....)))).)))))))...))))))))...............((((...))))... ( -18.70) >DroEre_CAF1 12300 99 - 1 UAUGUCUUAAGACAUAAGACAUUAAAUAUGACUUUAUAUCUCUUCUGAGGGCAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUGCCCGGGUUCCGGUCA ((((((....))))))...((..((((((((.(((((((((((....)))).)))))))...))))))))...))........(.((((...)))).). ( -22.60) >DroYak_CAF1 12584 99 - 1 CAUGUCUUAAGAAAUAAGACAUUAAAUAUGACUUUAUAUCUUUUCUGAGGGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUGCCCGGGUUCCGGUCA .((((((((.....)))))))).((((((((.(((((((((((....)))).)))))))...)))))))).............(.((((...)))).). ( -19.70) >consensus CAGGUCUUAAUAAAUAAGACAUUAAAUAUGACUUUAUAUCUUUUCUGAGAGAAUAUAAAUAUUCGUAUUUUAUUGAAAUAUCUACCCGGGUUCCGGUCA ...((((((.....))))))...((((((((.(((((((((((....)))).)))))))...))))))))...............((((...))))... (-16.80 = -17.00 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:47 2006