Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,478,456 – 12,478,550 |
Length | 94 |
Max. P | 0.931024 |
Location | 12,478,456 – 12,478,550 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -27.03 |
Consensus MFE | -20.02 |
Energy contribution | -20.38 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -2.25 |
Structure conservation index | 0.74 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12478456 94 - 20766785 GCCAGGAUAUGUGUCCUGGCUAUAGCCACACAACCUCGCACUCACAUGGCCGGCUGGCAUCCCUUGCGUAUACGUAAUGCUGCUUUAUUUAUGU ((((((((....))))))))....((((..................)))).(((.(((((....((((....)))))))))))).......... ( -26.17) >DroSec_CAF1 8031 94 - 1 GCCAGAAUAUGUGUCCUGGCUAUAGCCACACAUCCUCGCACUCACAUGGCCGGCUGGCAUCCCUUGCGUUUACGUAAUGCUGCUUUAUUUAUGU (((.((..((((((...(((....)))))))))..))((.(......))).))).(((((....((((....)))))))))............. ( -23.40) >DroSim_CAF1 7990 80 - 1 GCCAGGAUAUGUGUCCUGGCUAUAGCCACA--------------CAUGGCCGGCUAGCAUCCCUUGCGUAUACGUAAUGCUGCUUUAUUUAUGU ((((((((....))))))))....((((..--------------..)))).(((.(((((....((((....)))))))))))).......... ( -28.40) >DroEre_CAF1 8039 78 - 1 GCCAGGCUAU--GUCCUGGCUAUAGCCACAC--------------AUGGCCGGCUGGCAUCCCUUGCGUAUACGUAAUGGUGCUUUAUUUAUGU (((.((((((--((..((((....)))).))--------------))))))))).((((.((.(((((....))))).)))))).......... ( -33.70) >DroYak_CAF1 7808 92 - 1 GCCAGGAUUU--GUUCUGGCUAUAGCCACACAUCCUUGCACUCACAUGUCCGGCUGGCAUCCCUGGCGUAUACGCAAUAGUACUUUAUUUAUGU ((((((...(--((..((((....))))..((.((..(((......)))..)).)))))..))))))((((........))))........... ( -23.50) >consensus GCCAGGAUAUGUGUCCUGGCUAUAGCCACACA_CCU_GCACUCACAUGGCCGGCUGGCAUCCCUUGCGUAUACGUAAUGCUGCUUUAUUUAUGU ((((((((....))))))))..(((((........................)))))(((....(((((....)))))...)))........... (-20.02 = -20.38 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:46 2006