| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,473,848 – 12,473,948 |
| Length | 100 |
| Max. P | 0.997745 |
| Location | 12,473,848 – 12,473,948 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -19.12 |
| Consensus MFE | -10.10 |
| Energy contribution | -10.35 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.13 |
| Mean z-score | -3.78 |
| Structure conservation index | 0.53 |
| SVM decision value | 2.92 |
| SVM RNA-class probability | 0.997745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12473848 100 + 20766785 GUUUCCUAUUUCUUGUUCU---UGCAAGGAUCUUCCUAUUUCUUGCAGGGAUCAUCCUUUUUUCUUACAUGGAUCUUCCAUCUAGCAAGCACCCUUUUCCUUC ((((.(((......(((((---((((((((.........)))))))))))))................((((.....)))).))).))))............. ( -21.30) >DroSec_CAF1 3250 98 + 1 -UUUUCUAUUUCUUGUUCU---UGCAAGGAUCUUCCUAUUUCUUGCAGGGAUCAUCCUU-UUUCUUACAGGGAUCUUCCUACUUGCAACCACCCUUUUCCUUC -........(((((((...---.)))))))............(((((((((..((((((-........))))))..))))...)))))............... ( -20.40) >DroSim_CAF1 3209 99 + 1 GUUUCCUAUUUCUUGUUCU---UGCAAGGAUCUUCCUAUUUCUUGCAGGGAUCAUCCUU-UUUCUCACAGGGAUCUUCCUACUUGCAACCACCCUUAUCCUUC .........(((((((...---.)))))))............(((((((((..((((((-........))))))..))))...)))))............... ( -20.40) >DroEre_CAF1 3220 81 + 1 GUUUCCUAUUUAUUGUUCUUAAUGGAAGGAUCCUACUUUUUCUUGCAGGGAUCUUCCUU-CUC------------------CUUACAAGCAGCCUUUUCC--- (..((((.(((((((....)))))))))))..)........((((.(((((........-.))------------------))).))))...........--- ( -14.40) >consensus GUUUCCUAUUUCUUGUUCU___UGCAAGGAUCUUCCUAUUUCUUGCAGGGAUCAUCCUU_UUUCUUACAGGGAUCUUCCUACUUGCAACCACCCUUUUCCUUC ......................((((((((((((.............))))))................(((.....))).))))))................ (-10.10 = -10.35 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:44 2006