| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,457,322 – 12,457,424 |
| Length | 102 |
| Max. P | 0.743240 |
| Location | 12,457,322 – 12,457,424 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -31.79 |
| Consensus MFE | -21.72 |
| Energy contribution | -20.67 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12457322 102 + 20766785 UA-AAUGUUU--------AUCUAGUUCCUAACUAAGCAGCCAAAUAAGCGUUUGGGUUGUGGUUCCUCUGGCGAGGAGGAUGUGCGUCUGCAUCCCUUUUUCAGACGCAUC ..-.......--------.......((((((((..((((((((((....)))).))))))))))((((....)))))))).(((((((((.(........)))))))))). ( -29.30) >DroVir_CAF1 23230 102 + 1 -------UUCU--GCCUGCCGCAGUUCUUGACCAAGCAGCCCAACAAGCGUUUAGGUUGUGGCGCCUCCGGCGAGGAGGAUGUGCGUUUGCAUCCAUUUUUCCGGCGCAUC -------..((--((.....))))...........((((((.(((....)))..)))))).((((((((.....)))((((((......))))))........)))))... ( -33.20) >DroEre_CAF1 33064 103 + 1 UA-AAUAUUUU-------CCUUAGUUCCUAACCAAGCAGCCAAAUAAGCGUUUGGGUUGUGGUUCCUCCGGCGAGGAGGAUGUGCGUCUGCAUCCGUUUUUCAGACGCAUC ..-.(((((((-------((((.(((...((((..((((((((((....)))).)))))))))).....))))))))))))))(((((((.(........))))))))... ( -32.10) >DroWil_CAF1 69066 102 + 1 UA-UAUGUCU--------UUGCAGUUCCUUACCAAGCAGCCGAACAAACGUUUGGGUUGUGGUCCAACUGGUGAGGAAGAUGUGCGUCUACAUCCAUUUUUCCGGCGCAUC ..-.......--------..(((.((((((((((.....((((((....))))))((((.....))))))))))))))..)))(((((...............)))))... ( -31.36) >DroMoj_CAF1 26934 103 + 1 UGAAAUAUUUU--UC------AAGUUUUUGACCAAGCUGCCCAGCAAGCGUUUGGGCUGUGGCGCCACUGGCGAGGAGGAUGUGCGUUUGCAUCCCUUUUUCAGACGCAUC (((((....))--))------).............(((....)))..((((((((((((((....))).)))((((.((((((......)))))))))).))))))))... ( -32.90) >DroAna_CAF1 15424 105 + 1 AU-AAUGUUUUUG-----UUAUAGUUCCUAACUAAACAGCCCAAUAAGCGCUUGGGUUGUGGAUCCUCAGGCGAGGAAGAUGUGCGCUUGCAUCCUUUCUUCAGGCGCAUA ..-..........-----...((((.....)))).(((((((((.......)))))))))...(((((....)))))...((((((((((.(........))))))))))) ( -31.90) >consensus UA_AAUGUUUU_______CUGUAGUUCCUAACCAAGCAGCCCAACAAGCGUUUGGGUUGUGGUUCCUCUGGCGAGGAGGAUGUGCGUCUGCAUCCAUUUUUCAGACGCAUC ........................(((((..((..((((((.............))))))((.....))))..)))))...(((((((((.(.......).))))))))). (-21.72 = -20.67 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:43 2006