Locus 3768

Sequence ID 2R_DroMel_CAF1
Location 12,451,530 – 12,451,626
Length 96
Max. P 0.579274
window6106

overview

Window 6

Location 12,451,530 – 12,451,626
Length 96
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 83.17
Mean single sequence MFE -18.02
Consensus MFE -10.63
Energy contribution -11.85
Covariance contribution 1.22
Combinations/Pair 1.10
Mean z-score -2.53
Structure conservation index 0.59
SVM decision value 0.09
SVM RNA-class probability 0.579274
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12451530 96 - 20766785
CACUGCAGUGCACUGUGGCAAAGACAAACAC-AA---AUACAAGUGCACACUUGAGCGGAAACAAAGCACUGCUAAUUGUAAAUUGCAACAAUCUAAAAA
....(((((((..((((...........)))-).---...(((((....)))))...(....)...)))))))..(((((........)))))....... ( -23.40)
>DroGri_CAF1 16105 90 - 1
CAU----ACAUGU------ACAUAUAUAGAGAGUGUGUGGCAAGUGUGCACUUGAGUCGCAACAAAGCGCUCCUAAUUGUAAAUUGCAGCAAUCCAAAAA
...----...(((------.(((((((.....)))))))((((...((((...(((.(((......)))))).....))))..)))).)))......... ( -20.30)
>DroSec_CAF1 29748 92 - 1
CAU----GCACACUGUGGCAAAGACAAACAC-AA---AUACAAGUGCACACUUGAGCGAAAACAAAGCACUGCUAAUUGUAAAUUGCAACAAUCUAAAAA
..(----(((.((..(((((...........-..---...(((((....))))).((.........))..)))))...))....))))............ ( -14.50)
>DroSim_CAF1 30457 92 - 1
CAC----GCACACUGUGGCAAAGACAAACAC-AA---AUACAAGUGCACACUUGAGCGGAAACAAAGCACUGCUAAUUGUAAAUUGCAACAAUCUAAAAA
..(----((.....)))((((..((((....-..---...(((((....)))))(((((..........)))))..))))...))))............. ( -17.30)
>DroEre_CAF1 26119 92 - 1
CAC----ACACGCCGUGGCGAAAACAAACAC-AA---AUACAAGUGCACACUUGAGCGGAAACAAAGCACUGCUAAUUGUAAAUUGCAACAAUCUAAAAA
..(----((.....)))((((..((((....-..---...(((((....)))))(((((..........)))))..))))...))))............. ( -16.00)
>DroYak_CAF1 49013 92 - 1
CAC----ACAAACUGUGGCAAAAACAAACAC-AA---AUACAAGUGCACACUUGAGCGGAAACAAAGCACUGCUAAUUGUAAAUUGCAACAAUCUAAAAA
..(----((.....)))((((..((((....-..---...(((((....)))))(((((..........)))))..))))...))))............. ( -16.60)
>consensus
CAC____ACACACUGUGGCAAAGACAAACAC_AA___AUACAAGUGCACACUUGAGCGGAAACAAAGCACUGCUAAUUGUAAAUUGCAACAAUCUAAAAA
..............((.((((..((((.............(((((....)))))(((((..........)))))..))))...)))).)).......... (-10.63 = -11.85 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:42 2006