Locus 3767

Sequence ID 2R_DroMel_CAF1
Location 12,448,664 – 12,448,765
Length 101
Max. P 0.560423
window6105

overview

Window 5

Location 12,448,664 – 12,448,765
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.84
Mean single sequence MFE -28.20
Consensus MFE -13.84
Energy contribution -15.82
Covariance contribution 1.98
Combinations/Pair 1.29
Mean z-score -1.78
Structure conservation index 0.49
SVM decision value 0.05
SVM RNA-class probability 0.560423
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12448664 101 - 20766785
U--------------GUG----AGUUAAGC-AUUUUCCAUGGGAAAAUUCAAUUGGAGGUUCCCAUGGCAACAGCAUCACACUUGGCAGCCCAGCUGAAUGUGACAUUUGAGUUGCCAAU
(--------------(((----(.....((-..((.(((((((((..(((....)))..))))))))).))..)).))))).((((((((.(((.((.......)).))).)))))))). ( -36.40)
>DroSec_CAF1 26901 101 - 1
A--------------GUA----AGUUAAGC-AUUUCCCAUGGGAAAAUUCAAUUGGAGGCUACCAUGGCAACAGCAUCACACUUGGCAGCCCAGCUGAAUGUGACAUUCGAGUUUCCAAU
.--------------...----........-.(((((....))))).....((((((((((...(((((....)).(((((.(..((......))..).))))))))...)))))))))) ( -30.20)
>DroSim_CAF1 27601 101 - 1
A--------------GUG----AGUUAAGC-AUUUUCCAGGGGAAAAUUCAAUUGGAGGCUACCAUGGCAACAGCAUCACACUUGGCAGCCCAGCUGAAUGUGACAUUCGAGUUUCCAAU
.--------------...----......(.-(((((((...))))))).).((((((((((...(((((....)).(((((.(..((......))..).))))))))...)))))))))) ( -29.40)
>DroEre_CAF1 22763 99 - 1
A--------------GUGAAAAUGCUCAGCUAUUUUCCAUGCGAAAAUUCAAUUGGAGUUUCCCAUGGCAGCAGCAUCACACCUGCCA-------UGAAUCUGCCAUUCGAGUUGCCAAU
.--------------(.((((((((...)).)))))))....(..(((((...(((((.....((((((((...........))))))-------))...)).)))...)))))..)... ( -21.90)
>DroYak_CAF1 45860 101 - 1
A--------------GCG----UGUUAAGC-AUUUUCCAUGGGAAAAUUCAAUUGAAGGUUCCCAUGGCUACAGCAUCACACUUGGCAGCCCAGUUGAAUGUGACAUUCGAGUUUCCAGU
.--------------..(----(((...((-.....(((((((((..(((....)))..))))))))).....))...))))((((.(((....(((((((...)))))))))).)))). ( -31.50)
>DroAna_CAF1 6224 111 - 1
UAAGAGGGUAGGUGGGGG----AGAUGGAA-AUU----GUAGGCAAAUUUAAUUCAAGGUUUCCAUGGACAGAGUAUCACACUUGAUGGCACAGAUGGAUGUGACAUUUGAGUUUCGAAU
...(((.((..((((..(----.((..(((-.((----(....))).)))...))....)..))))..))..........(((..(((.((((......)))).)).)..)))))).... ( -19.80)
>consensus
A______________GUG____AGUUAAGC_AUUUUCCAUGGGAAAAUUCAAUUGGAGGUUCCCAUGGCAACAGCAUCACACUUGGCAGCCCAGCUGAAUGUGACAUUCGAGUUUCCAAU
............................((......(((((((((..(((....)))..))))))))).....)).(((((.(((((......))))).)))))................ (-13.84 = -15.82 +   1.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:41 2006