| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,448,439 – 12,448,539 |
| Length | 100 |
| Max. P | 0.908820 |
| Location | 12,448,439 – 12,448,539 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.75 |
| Mean single sequence MFE | -29.59 |
| Consensus MFE | -22.14 |
| Energy contribution | -22.37 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12448439 100 - 20766785 UAAAAGUG-------------------GCAACUCUUUGCUAAAGCAAGGAGUGAGAUAUUUUGGAGUUAUUGAAAAAUAUGAUUGAUGAUCAAUUUACUUAAAUGAGUUCACUCUAGCC .......(-------------------((.(((((((((....)))))))))(((......((((.(((((.........(((((.....)))))......))))).)))))))..))) ( -24.66) >DroSec_CAF1 26657 119 - 1 UAAAAGUGGGUUACAUUUAGCUAGGGGGCAACUCUUUGCUAAAGCAAGGAGUAAGAUAUUUUGGCGUUAUUGGAAAAUAUGGUUGAUGAUCAAUUUACUUAAGUAAGUUCGCUCUAACC ...(((((.....)))))......(((((.(((((((((....)))))))))..(((...(..((..((((....))))..))..)..)))(((((((....))))))).))))).... ( -32.50) >DroSim_CAF1 27374 119 - 1 UAAAAGUGGGUUACAUUUAACUAGAGGGCAACUCUUUGCUAAAGCAAGGAGUAAGAUAUUUUGGCGUUAUUGGCAAAUAUGGUUGAUGAUCAAUUUACUUAAGUGAGUUCGCUCUAACC ....((((..((.(((((((.((((.....(((((((((....)))))))))..(((...(..((..((((....))))..))..)..)))..)))).)))))))))..))))...... ( -31.60) >consensus UAAAAGUGGGUUACAUUUA_CUAG_GGGCAACUCUUUGCUAAAGCAAGGAGUAAGAUAUUUUGGCGUUAUUGGAAAAUAUGGUUGAUGAUCAAUUUACUUAAGUGAGUUCGCUCUAACC ....((((......................(((((((((....)))))))))..(((...(..((..((((....))))..))..)..)))(((((((....)))))))))))...... (-22.14 = -22.37 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:40 2006