Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,444,819 – 12,444,925 |
Length | 106 |
Max. P | 0.584036 |
Location | 12,444,819 – 12,444,925 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -30.23 |
Consensus MFE | -19.64 |
Energy contribution | -19.87 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.26 |
Mean z-score | -1.76 |
Structure conservation index | 0.65 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12444819 106 - 20766785 CCGAUUAGGUCGUAACCACUUGGACAAU--UCACACAAAUCGGUCAAAUCGGCCGAUUUGUUA-UCGCUGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCUA---U ..((...((((....((....))(((((--(...(((((((((((.....)))))))))))..-((((..(..-..)...))))))))))))))....)).........---. ( -29.60) >DroSec_CAF1 23417 106 - 1 CCGAUUAGGUCGUAACCACUUGGACAAU--UCACACAAAUUGGCCAAAUCGGCCGAUUUGUUA-UCGCUGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCCA---U ..((...((((....((....))(((((--(...(((((((((((.....)))))))))))..-((((..(..-..)...))))))))))))))....)).........---. ( -30.20) >DroSim_CAF1 23925 106 - 1 CCGAUUAGGUCGUAACCACUUGGACAAU--UCACACAAAUCGGCCAAAUCGGCCGAUUUGUUA-UCGCAGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCCA---U ..((...((((....((....))(((((--(...(((((((((((.....)))))))))))..-(((((.(..-..)..)))))))))))))))....)).........---. ( -33.30) >DroEre_CAF1 19155 106 - 1 CCGAUUAGGCCGUAGCCACUUGGACAAU--UCACGCAAAUCGGUCAAAUCGGCCGAUUUGUUA-UCGCUGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCUG---G (((((((...((.((((((.........--....(((((((((((.....)))))))))))..-((((..(..-..)...))))....)))))))).....)))))..)---) ( -33.90) >DroYak_CAF1 41948 109 - 1 CCGAUUAGGUCGUAACCUCUUGGACAGU--UCACGCAAAUCGGUCAAAUCGGACGAUUUGUUA-UCGCUGCUA-ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCUGUUUG .(((.(((.(((((..(((((((.((((--....((((((((..(.....)..))))))))..-..)))))))-).))))))))((((((((......))))))))))).))) ( -29.40) >DroPer_CAF1 2832 100 - 1 CCGAUUAGGUCGAAACCAAUUCGACAAGCGUCCCACAAAUUGAG-----GGACUG-UCUUUUAGCCACAGAAACCCGAGUGCGAAACUGUCCCGUGGUUU----UUAUA---U ..(((...((((((.....))))))....(((((.(.....).)-----)))).)-))..........(((((((((.(..((....))..))).)))))----))...---. ( -25.00) >consensus CCGAUUAGGUCGUAACCACUUGGACAAU__UCACACAAAUCGGUCAAAUCGGCCGAUUUGUUA_UCGCUGCUA_ACGAGUGCGAAAUUGUGGCUCGUUUCAUAAUUCUA___U ((((...(((....)))..))))...........(((((((((((.....))))))))))).............(((((((((....))).))))))................ (-19.64 = -19.87 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:39 2006