| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,441,919 – 12,442,014 |
| Length | 95 |
| Max. P | 0.622023 |
| Location | 12,441,919 – 12,442,014 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 84.22 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -17.98 |
| Energy contribution | -19.47 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12441919 95 - 20766785 GGGAAGUGGGGCGUAUUCGCAUAUGGGGAUAGCUCUCUCUCUAUAUGUGCUUGUACACCCGGAGAAAAUCAUUGGUUCAUUCGAAUAGUGACCUU (((.....(((.((((.((((((((((((........))))))))))))...)))).)))........((((((.(((....)))))))))))). ( -30.80) >DroSec_CAF1 20617 89 - 1 GCGGAGUGGGUCGUAU----AUAUGGGGAUAGCUCU--CUCUAUAUGUGCUUGUACACCCGGAGAAAAUCAUUGGUUAAUUAGAAUAAUGAUCUU .(((.(((....((((----(((((((((......)--)))))))))))).....))))))((((...((((((.((.....)).)))))))))) ( -26.10) >DroSim_CAF1 21121 93 - 1 GAGGAGUGGGUCGCAUUCGCAUAUGGGGAUAGCUCU--CUCUAUGUGUGCUAGUACACCCAGAGAAAAUCAUUGGUUCAUUCGAAUAAUGAUCUU ......(((((.((...((((((((((((......)--)))))))))))...))..)))))((((...((((((.(((....))))))))))))) ( -27.40) >DroYak_CAF1 39085 91 - 1 --GGAGUGGGCUGUAUUCGCAUACGGGGAUAGCUCU--CUCUAUAUGUGCGCGUACACCCGGAAAAAAUCGUUGGCUCUACCGAAUAAUGACCUU --((..((((.(((((.((((((.(((((......)--))))...)))))).))))))))).......((((((..((....)).)))))))).. ( -27.00) >consensus G_GGAGUGGGUCGUAUUCGCAUAUGGGGAUAGCUCU__CUCUAUAUGUGCUUGUACACCCGGAGAAAAUCAUUGGUUCAUUCGAAUAAUGACCUU ......(((((.((((.(((((((((((..........)))))))))))...))))))))).......((((((.(((....))))))))).... (-17.98 = -19.47 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:38 2006