Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,434,176 – 12,434,292 |
Length | 116 |
Max. P | 0.995139 |
Location | 12,434,176 – 12,434,292 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 70.57 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -18.26 |
Energy contribution | -19.60 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.20 |
Mean z-score | -2.63 |
Structure conservation index | 0.51 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12434176 116 + 20766785 ACCAUUCAUG---CCAAUGAGGGAGCCAAAGUCCAUUGUUCUAGCCAGUUUCUGGUCGGGGCAAGUGGCUUCAACGCUUGCUCUUUGUGCCCCUGCACCUGCCCCUGCCCCUGCAACUG .........(---((((.(((.((((..(((.(((((((((..(((((...)))))..)))).))))))))....)))).))).))).))...((((...((....))...)))).... ( -36.30) >DroPse_CAF1 49192 95 + 1 GCUAUUCAUGCUGCCAAUGAUGGACCG------CAUUGUUCUAGGCCAUUUCUGGCCAGGACAAGUGGCCUCAACUCUUGCUCUUUAUACUGCGUUGGCUG------------------ ((.......)).((((((((.((.(((------(.(((((((.(((((....)))))))))))))))))))).......((..........))))))))..------------------ ( -35.50) >DroPer_CAF1 48641 95 + 1 GCUAUUCAUGCUGCCAAUGAUGGACCG------CAUUGUUCUAGGCCAUUUCUGGCCAGGACAAGUGGCCUCAACUCUUGCUCUUUAUACUGCGUUGGCUG------------------ ((.......)).((((((((.((.(((------(.(((((((.(((((....)))))))))))))))))))).......((..........))))))))..------------------ ( -35.50) >consensus GCUAUUCAUGCUGCCAAUGAUGGACCG______CAUUGUUCUAGGCCAUUUCUGGCCAGGACAAGUGGCCUCAACUCUUGCUCUUUAUACUGCGUUGGCUG__________________ ............(((((((.(((............(((((((.(((((....))))))))))))..(((..........))).......)))))))))).................... (-18.26 = -19.60 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:37 2006