Locus 3762

Sequence ID 2R_DroMel_CAF1
Location 12,425,384 – 12,425,492
Length 108
Max. P 0.999192
window6100

overview

Window 0

Location 12,425,384 – 12,425,492
Length 108
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 64.33
Mean single sequence MFE -28.18
Consensus MFE -15.81
Energy contribution -15.59
Covariance contribution -0.22
Combinations/Pair 1.09
Mean z-score -2.11
Structure conservation index 0.56
SVM decision value 3.42
SVM RNA-class probability 0.999192
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12425384 108 - 20766785
CUGUGAGCGGAAGCACUUACAAUCCUGCGGUGCUUCCGUUGAGCAACACGC----UCCACGUCACCAUCCUAACCACGUGCUCGUCGGGAUCCUAAUGUGUCCUGAUGGCUC
..(((((((((((((((..((....)).))))))))))))((((.....))----)))))...................((.((((((((..(....)..)))))))))).. ( -41.10)
>DroPse_CAF1 37601 90 - 1
UUGAAAGCGGAAGCACUUAAAUUCCUGCCGUGUUUCCGUUAGCCAAC-CUAGCGACACAU--UGCCGUCUUCAUCCUCCG-UCUUGGC-AUU-----------------CUC
..((((((((((((((.............))))))))))).(((((.-...((((....)--))).(....)........-..)))))-.))-----------------).. ( -21.72)
>DroPer_CAF1 37570 90 - 1
UUGAAAGCGGAAGCACUUAAAUUACUGCCGUGUUUCCGUUAGCCAAC-CUAGCGACACAU--UGCCGUCUUCAUCCUCCG-UCUUGGC-AUU-----------------CUC
..((((((((((((((.............))))))))))).(((((.-...((((....)--))).(....)........-..)))))-.))-----------------).. ( -21.72)
>consensus
UUGAAAGCGGAAGCACUUAAAUUCCUGCCGUGUUUCCGUUAGCCAAC_CUAGCGACACAU__UGCCGUCUUCAUCCUCCG_UCUUGGC_AUU_________________CUC
.....(((((((((((.............)))))))))))........................................................................ (-15.81 = -15.59 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:36 2006