Locus 3761

Sequence ID 2R_DroMel_CAF1
Location 12,418,181 – 12,418,277
Length 96
Max. P 0.710991
window6099

overview

Window 9

Location 12,418,181 – 12,418,277
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 79.68
Mean single sequence MFE -18.98
Consensus MFE -7.86
Energy contribution -10.70
Covariance contribution 2.84
Combinations/Pair 1.15
Mean z-score -2.17
Structure conservation index 0.41
SVM decision value 0.38
SVM RNA-class probability 0.710991
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12418181 96 + 20766785
CAAUGCAAAUUUAUAUAUGUUUGUAAUAAAUACAUGUAUGUAUGUAUAUAAGGCUGUGCGUUGAAGGUCCUAACACGAUAACGAUGAAAUCGUUAC
(((((((..(((((((((((.((((.....)))).......)))))))))))....)))))))...............(((((((...))))))). ( -19.70)
>DroSec_CAF1 34591 96 + 1
CAAUGCAAAUUUUUAUAUGUAUGUAAUAAAUACAUGUAUGUAUGUAUAUACGGCUGUGCGUUGAAGGUCCUAACACGAUAACGAUGAAAUCGUUAC
(((((((......(((((((((.......)))))))))(((((....)))))....)))))))...............(((((((...))))))). ( -21.20)
>DroSim_CAF1 35897 88 + 1
CAAUGCAAAUUUAUAUAUGUAUGUAAUAAAUACACGUAUGUAU--------GGCUGUGCGUUGAAGGUCCUAACACGAUAACGAUGAAAUCGUUAU
(((((((...(((((((((..((((.....))))..)))))))--------))...)))))))..............((((((((...)))))))) ( -23.80)
>DroEre_CAF1 39116 88 + 1
CAAUGCAAAUUUAUAUAU----GUAAUAGAUACAUGUAC----AUAUAUAGGGCUGUGCGUUGAAAGUCCUAACACGAUAACGAUGAAAUCGUUAC
(((((((..(((((((((----(((.((......)))))----)))))))))....)))))))...............(((((((...))))))). ( -22.80)
>DroAna_CAF1 35481 77 + 1
CAAUGCAAAUUUAUAUAC----AAAAUAAAUAUAUAUCU----------A-----CUUCGUCCUAUGUCCUAACACGAUAACGAUGAAAUUGUUAC
....((((((((((....----...))))))........----------.-----.((((((...((((.......))))..)))))).))))... (  -7.40)
>consensus
CAAUGCAAAUUUAUAUAUGU_UGUAAUAAAUACAUGUAUGUAU_UAUAUA_GGCUGUGCGUUGAAGGUCCUAACACGAUAACGAUGAAAUCGUUAC
(((((((......((((((((((((...........))))))))))))........)))))))...............(((((((...))))))). ( -7.86 = -10.70 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:35 2006