Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,405,833 – 12,405,931 |
Length | 98 |
Max. P | 0.728519 |
Location | 12,405,833 – 12,405,931 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.50 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -15.69 |
Energy contribution | -17.00 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.10 |
Mean z-score | -1.81 |
Structure conservation index | 0.69 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12405833 98 + 20766785 --------UUUCAAAAGCUACAGCCAAUGCCAAGGCAACUUAAAAGGACUUGCAAGGAAAAGAAAGCCGUUGACCAAAGACCAGGCCAAAAAGCAGUGUUGGCCAA --------..((((..(((...(((........)))............(((........)))..)))..))))..........((((((.........)))))).. ( -20.00) >DroSec_CAF1 22374 98 + 1 --------UUUCAAAAGCUACAGCCAAUGCCAAGGUAACUUAAAAGGACUUGCAAGGAAAGGCAAGCCGUUGACCAAAGCCCAGGCCAAACACCAGUGUUGGCCAA --------........(((.((((...(((....)))........((.(((((........))))))))))).....)))...((((((.((....)))))))).. ( -25.30) >DroSim_CAF1 22947 98 + 1 --------UUUCAAAAGCUACAGCCAAUGCCAAGGUAACUCAAAAGGACUUGCAAGGAAAGGCAAGCCGUUGACCAAAGCCCAGGCCAAAAACCAGUGUUGGCCAA --------..............((((((((...(((...((((..((.(((((........))))))).)))).....((....)).....))).))))))))... ( -24.90) >DroYak_CAF1 23890 100 + 1 AUCAUAUCCUUUAAAAACUGCAGCCAAUGCCAAGGCAACUUAAAAGGAUCUCAAAGG-----AAAGCGGUAGACCAAAGACCAGGCCAAA-AGCAGUAAUGGCCAA .....(((((((.......(((.....))).(((....))).)))))))......((-----.....((....)).....)).(((((..-........))))).. ( -21.10) >consensus ________UUUCAAAAGCUACAGCCAAUGCCAAGGCAACUUAAAAGGACUUGCAAGGAAAGGAAAGCCGUUGACCAAAGACCAGGCCAAAAACCAGUGUUGGCCAA ....................((((...(((....)))........((.(((((........)))))))))))...........((((((.........)))))).. (-15.69 = -17.00 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:32 2006