Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,401,447 – 12,401,537 |
Length | 90 |
Max. P | 0.722899 |
Location | 12,401,447 – 12,401,537 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 89.69 |
Mean single sequence MFE | -25.09 |
Consensus MFE | -17.84 |
Energy contribution | -17.48 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -2.19 |
Structure conservation index | 0.71 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12401447 90 + 20766785 GCUAAUGAGGCUCAGAAAGGAGCAAACAGGA--GCGACAAAGGAUAAGGGGAUUACUCUGGCUUCGAGGAGAAAUUCCUGGAGCUGUCAAUG (((..((..((((......))))...))..)--))(((........((((.....))))(((((((.(((....))).)))))))))).... ( -29.60) >DroSec_CAF1 18059 89 + 1 GCUAAUGAGGCUCAGAAAGGAGCUAACAGGA--GCGACA-AGGAUAAGGGGAUUGCUCUGGCUUCGAGGAGGAAUUCCUGGAGCUGUCAAUG (((..((.(((((......)))))..))..)--))((((-.(..(..(((((((.((((........)))).)))))))..).))))).... ( -29.30) >DroSim_CAF1 18544 89 + 1 GCUAAUGAGGCUCAGAAAGGAGCUAACAGGA--GCGACA-AGGAUAAGGGGAUUACUCUGGCUUCGAGGAGGAAUUCCUGGAGCUGUCAAUG (((..((.(((((......)))))..))..)--))(((.-......((((.....))))((((((.(((((...)))))))))))))).... ( -29.60) >DroEre_CAF1 22909 89 + 1 GCUAAUGAGGUUCAGCAAGGAGCAAAUAGGA--GGCACA-AGGAUAAGGGGAUUACUUUGGGGUCGAGGGGAAAUUCCUGGAGCUGUCAAUG .....((((((((....(((((.........--(((.((-(((.(((.....))))))))..))).........))))).))))).)))... ( -18.77) >DroYak_CAF1 19379 91 + 1 GCUAAUGAGGCUCAGAAAGGAGCAAACAGGAUAAGAGCA-AGGAUAAGGGGAUUACUUUGGGUUUGGGGAGGAAUUCCAGGAGCUGUCAAUG .....((((((((........................((-((..(((((......)))))..))))((((....))))..))))).)))... ( -18.20) >consensus GCUAAUGAGGCUCAGAAAGGAGCAAACAGGA__GCGACA_AGGAUAAGGGGAUUACUCUGGCUUCGAGGAGGAAUUCCUGGAGCUGUCAAUG (((......((((......))))........................(((((((.((((........)))).)))))))..)))........ (-17.84 = -17.48 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:31 2006